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Using temp option breaks MFannot #63

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Adamtaranto opened this issue Jan 6, 2024 · 0 comments

Adamtaranto commented Jan 6, 2024

Using the MFannot docker container.

If the --T option is set then step 1 fails even though Masterfile_copy is created in the correct location.

mfannot -g 4 -l data/test_mito.log -o data/test_outfile --T data/tmp examples/allomyces.fna

Error:

----------------------------------
         Gene Annotation          
----------------------------------
Parsing masterfile examples/allomyces.fna...

1) Translate (flip)...
Cannot read from masterfile 'data/Masterfile_copy': No such file or directory

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