-
Notifications
You must be signed in to change notification settings - Fork 0
/
index.html
695 lines (529 loc) · 20.6 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>The Social Science Reproduction Platform</title>
<meta charset="utf-8" />
<meta name="author" content="Fernando Hoces de la Guardia, BITSS" />
<script src="libs/header-attrs/header-attrs.js"></script>
<link href="libs/remark-css/default.css" rel="stylesheet" />
<link href="libs/remark-css/metropolis.css" rel="stylesheet" />
<link href="libs/remark-css/metropolis-fonts.css" rel="stylesheet" />
</head>
<body>
<textarea id="source">
class: center, middle, inverse, title-slide
.title[
# The Social Science Reproduction Platform
]
.subtitle[
## RT2
]
.author[
### Fernando Hoces de la Guardia, BITSS
]
.date[
### 06 June 2024 <a href="https://fhoces.github.io/RT2-ssrp-2024/">Slides</a>
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
<style>
.center2 {
margin: 0;
position: absolute;
top: 50%;
left: 50%;
-ms-transform: translate(-50%, -50%);
transform: translate(-50%, -50%);
}
pre.sourceCode {
max-height: 200px;
overflow-y: auto;
}
/*
.remark-slide-number {
position: inherit;
}
.remark-slide-number .progress-bar-container {
position: absolute;
bottom: 0;
height: 4px;
display: block;
left: 0;
right: 0;
}
.remark-slide-number .progress-bar {
height: 100%;
background-color: blue;
}
*/
</style>
<style type="text/css">
# CSS for including pauses in printed PDF output (see bottom of lecture)
@media print {
.has-continuation {
display: block !important;
}
}
</style>
# Motivation I: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
<br>
.font120[
Clarebout Principle:
</br></br>
“An article about computational science in a scientific publication is not the scholarship itself, it’s merely scholarship advertisement. The actual scholarship is the complete software development environment and the complete set of instructions which generated the figures.”
.right[ <cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation I: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
<br>
.font120[
Clarebout Principle:
</br></br>
“An **article** about computational science in a **scientific publication** is not the scholarship itself, it’s merely scholarship **advertisement**. The **actual scholarship** is the **complete software development environment and the complete set of instructions** which generated the figures.”
.right[ <cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>]
]
]
---
# Motivation II: Prevent Loss of Knowledge
.font120[Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course (e.g., Labor Economics, Social Psychology). A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results. ]
--
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| </br></br> | |
| </br></br> | |
| </br></br> | |
| </br></br> | </br> |
---
count:false
# Motivation II: Prevent Loss of Knowledge
.font120[Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course (e.g., Labor Economics, Social Psychology). A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results. ]
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| </br></br> | |
| </br></br> | |
| </br></br> | </br> |
---
count:false
# Motivation II: Prevent Loss of Knowledge
.font120[Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course (e.g., Labor Economics, Social Psychology). A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results. ]
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| </br></br> | |
| </br></br> | </br> |
---
count:false
# Motivation II: Prevent Loss of Knowledge
.font120[Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course (e.g., Labor Economics, Social Psychology). A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results. ]
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| Improve | E.g. fixed paths, libraries,<br>added missing files, etc. |
| </br></br> | </br> |
---
count:false
# Motivation II: Prevent Loss of Knowledge
.font120[Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course (e.g., Labor Economics, Social Psychology). A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results. ]
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| Improve | E.g. fixed paths, libraries,<br>added missing files, etc. |
| Test robustness | Results are robust to additional <br>specifications |
.font120[
.center[**Key challenge: Standardization**]
]
---
count: true
background-image: url(https://media.tenor.com/4D-9tETtpFIAAAAd/football-goal.gif)
background-size: contain
# Motivation II: Prevent Loss of Knowledge
[](https://media.tenor.com/4D-9tETtpFIAAAAd/football-goal.gif)
---
count: true
background-image: url(Images/paper-claims.svg)
background-size: 610px
background-position: 75% 0%
# Standarized Scope of a Reproduction
.pull-left[
.font100[
Each **reproduction attempt** is centered <br>
around scientific **claims** (following [SCORE](https://replicats.research.unimelb.edu.au)).
One paper can contain several claims.
Each claim may be supported by various </br>
**display items**: tables, figures & inline results.
A reproduction attempt is at the claim level, <br>
and reproducers must record their <br>
**specifications** of interest.
<br><br>
]
DI: Display Item
S: Specificaiton
]
---
background-image: url(Images/stages.svg)
background-size: contain
# Stages
---
background-image: url(Images/assess_example2.png)
background-size: 70%
background-position: 50% 50%
count:true
# Standzarized Assessment
---
background-image: url(Images/home_page.png)
background-size: contain
count:true
.center[
# Demo: [socialsciencereproduction.org]()
]
---
# Try It Yourself!
.font130[
- Create an account
- Think of a paper (go to a Journal and choose a random paper if you can't think of a particular paper)
- Check if it's already in the SSRP
- If not, start a new entry
- Quickly verify if there is any reproduction package available and declare as abandoned if there is none
- If there is a reproduction package continue the reproduction later on!
]
---
background-image: url(Images/scope.svg), url(Images/scope_paper.png)
background-size: 400px, 700px
background-position: 95% 100%, 0% 10%
count:false
# Scope
---
background-image: url(Images/scope.svg), url(Images/scope_paper2.png), url(Images/scope_paper.png)
background-size: 400px, 500px, 700px
background-position: 95% 100%, 90% 0%, 0% 10%
count:false
# Scope
---
background-image: url(Images/scope.svg), url(Images/scope_example.png), url(Images/scope_paper2.png) , url(Images/scope_paper.png)
background-size: 400px, 600px, 500px, 700px
background-position: 95% 100%, 100% 75%, 90% 0%, 0% 10%
count:true
# Scope
---
background-image: url(Images/assess.svg), url(Images/assess_paper1.png)
background-size: 400px, 120px
background-position: 95% 100%, 0% 10%
count:false
# Standzarized Assessment
---
background-image: url(Images/assess.svg), url(Images/assess_paper2.png)
background-size: 400px, 120px
background-position: 95% 100%, 0% 10%
count:false
# Standzarized Assessment
---
background-image: url(Images/assess.svg), url(Images/assess_example1.png), url(Images/assess_paper2.png)
background-size: 400px, 500px, 120px
background-position: 95% 100%, 15% 50%, 0% 10%
count:false
# Standzarized Assessment
---
background-image: url(Images/assess_example2.png), url(Images/assess.svg), url(Images/assess_example1.png) , url(Images/assess_paper2.png)
background-size: 600px, 400px, 500px, 120px
background-position: 100% 80%,95% 100%, 15% 50%, 0% 10%
count:true
# Standzarized Assessment
---
background-image: url(Images/improve.svg)
background-size: 700px
background-position: 50% 20%
# Standarized Improvements
</br></br></br></br></br></br></br></br>
## Three types of improvements:
.font130[
1. Improvements at the paper level (e.g., improve documentation following [TIER's protocols](https://www.projecttier.org/tier-protocol/specifications/#overview-of-the-documentation))
2. Improvements at the display-item level
3. Specific future improvements
]
---
background-image: url(Images/robust.svg)
background-size: 700px
background-position: 50% 20%
# Robustness Checks
</br></br></br></br></br></br></br></br>
## Two main parts for robustness:
.font130[
1. Increase the number of robustness checks
2. Justify the appropriateness of a specific test
]
---
background-image: url(Images/robust.svg), url("Images/robustness checks.svg")
background-size: 300px, 500px
background-position: 0% 100%, 100% 60%
# Robustness
.font120[
**Robustness checks:** any possible change in a computational choice, both in data analysis and data cleaning
]
--
.font110[
.pull-left[
**Reasonable specifications** ([Simonsohn et. al., 2018](https://urisohn.com/sohn_files/wp/wordpress/wp-content/uploads/Paper-Specification-curve-2018-11-02.pdf)):
1. Sensible tests of the research question
2. Expected to be statistically valid, and
3. Not redundant with other specifications in the set.
Reproducers will be able to record two types of contributions:
- Mapping the universe of robustness checks
- Proposing a specific robustness check
]
]
---
background-image: url(Images/completed_repro1.png)
background-size: 450px
background-position: 0% 0%
count:false
# .font90[Completed Reproduction: Generate Knowledge and Get Credit]
---
background-image: url(Images/completed_repro2.png), url(Images/completed_repro1.png)
background-size: 300px, 450px
background-position: 35% 0%, 0% 0%
count:false
# .font90[Completed Reproduction: Generate Knowledge and Get Credit]
---
background-image: url(Images/completed_repro3.png) ,url(Images/completed_repro2.png), url(Images/completed_repro1.png)
background-size: 600px , 300px, 450px
background-position: 100% 10%, 35% 0%, 0% 0%
count:true
# .font90[Completed Reproduction: Generate Knowledge and Get Credit]
.pull-right[
.font130[
<br><br><br><br><br><br><br>
- **Share it:** Original authors, instructors, other researchers, add it to your CV
- **Discuss it:** Discourse forum for reproductions
- **Cite it:** Each reproduction has a citable DOI
- [Example here](https://www.socialsciencereproduction.org/reproductions/40/published/index)
]
]
---
background-image: url(Images/use1.png)
background-size: 500px
background-position: 0% 0%
count:false
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
---
background-image: url(Images/use2.png), url(Images/use1.png)
background-size: 600px, 500px
background-position: 35% 100%, 0% 0%
count:false
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
<br><br><br><br><br><br><br><br>
.font120[
Consult the <br> supporting <br>
[**guide**](https://bitss.github.io/ACRE/)
]
---
background-image: url(Images/use3.png) ,url(Images/use2.png), url(Images/use1.png)
background-size: 400px, 600px, 500px
background-position: 100% 0%, 35% 100%, 0% 0%
count:true
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
<br><br><br><br><br><br><br><br>
.font120[
Consult the <br> supporting <br>
[**guide**](https://bitss.github.io/ACRE/)
]
.right[
.font120[
[**Ask**](https://forum.socialsciencereproduction.org) questions
]
]
---
background-image: url(Images/paper-title.png)
background-size: contain
count:true
# First Insights Coming Out of the SSRP
---
background-image: url(Images/paper-claims.svg), url(Images/table-2.png)
background-size: 200px, contain
background-position: 90% 100%, 50% 50%
count:true
# First Insights: Some Utilization
---
background-image: url(Images/figure-2.png)
background-size: contain
count:true
# First Insights: Distribution of Scores for Display Items
---
background-image: url(Images/figure-3.png)
background-size: contain
count:true
# Can Aggregate at Paper Level In Different Ways
---
class: inverse, center, middle
# .font140[ Thank You]
<html><div style='float:left'></div><hr color='#EB811B' size=1px width=100%></html>
.font190[
<acre@berkeley.edu>
<fhoces@berkeley.edu>
]
</textarea>
<style data-target="print-only">@media screen {.remark-slide-container{display:block;}.remark-slide-scaler{box-shadow:none;}}</style>
<script src="https://remarkjs.com/downloads/remark-latest.min.js"></script>
<script>var slideshow = remark.create({
"ratio": "16:9",
"highlightStyle": "github",
"highlightLines": true,
"countIncrementalSlides": false
});
if (window.HTMLWidgets) slideshow.on('afterShowSlide', function (slide) {
window.dispatchEvent(new Event('resize'));
});
(function(d) {
var s = d.createElement("style"), r = d.querySelector(".remark-slide-scaler");
if (!r) return;
s.type = "text/css"; s.innerHTML = "@page {size: " + r.style.width + " " + r.style.height +"; }";
d.head.appendChild(s);
})(document);
(function(d) {
var el = d.getElementsByClassName("remark-slides-area");
if (!el) return;
var slide, slides = slideshow.getSlides(), els = el[0].children;
for (var i = 1; i < slides.length; i++) {
slide = slides[i];
if (slide.properties.continued === "true" || slide.properties.count === "false") {
els[i - 1].className += ' has-continuation';
}
}
var s = d.createElement("style");
s.type = "text/css"; s.innerHTML = "@media print { .has-continuation { display: none; } }";
d.head.appendChild(s);
})(document);
// delete the temporary CSS (for displaying all slides initially) when the user
// starts to view slides
(function() {
var deleted = false;
slideshow.on('beforeShowSlide', function(slide) {
if (deleted) return;
var sheets = document.styleSheets, node;
for (var i = 0; i < sheets.length; i++) {
node = sheets[i].ownerNode;
if (node.dataset["target"] !== "print-only") continue;
node.parentNode.removeChild(node);
}
deleted = true;
});
})();
// add `data-at-shortcutkeys` attribute to <body> to resolve conflicts with JAWS
// screen reader (see PR #262)
(function(d) {
let res = {};
d.querySelectorAll('.remark-help-content table tr').forEach(tr => {
const t = tr.querySelector('td:nth-child(2)').innerText;
tr.querySelectorAll('td:first-child .key').forEach(key => {
const k = key.innerText;
if (/^[a-z]$/.test(k)) res[k] = t; // must be a single letter (key)
});
});
d.body.setAttribute('data-at-shortcutkeys', JSON.stringify(res));
})(document);
(function() {
"use strict"
// Replace <script> tags in slides area to make them executable
var scripts = document.querySelectorAll(
'.remark-slides-area .remark-slide-container script'
);
if (!scripts.length) return;
for (var i = 0; i < scripts.length; i++) {
var s = document.createElement('script');
var code = document.createTextNode(scripts[i].textContent);
s.appendChild(code);
var scriptAttrs = scripts[i].attributes;
for (var j = 0; j < scriptAttrs.length; j++) {
s.setAttribute(scriptAttrs[j].name, scriptAttrs[j].value);
}
scripts[i].parentElement.replaceChild(s, scripts[i]);
}
})();
(function() {
var links = document.getElementsByTagName('a');
for (var i = 0; i < links.length; i++) {
if (/^(https?:)?\/\//.test(links[i].getAttribute('href'))) {
links[i].target = '_blank';
}
}
})();
// adds .remark-code-has-line-highlighted class to <pre> parent elements
// of code chunks containing highlighted lines with class .remark-code-line-highlighted
(function(d) {
const hlines = d.querySelectorAll('.remark-code-line-highlighted');
const preParents = [];
const findPreParent = function(line, p = 0) {
if (p > 1) return null; // traverse up no further than grandparent
const el = line.parentElement;
return el.tagName === "PRE" ? el : findPreParent(el, ++p);
};
for (let line of hlines) {
let pre = findPreParent(line);
if (pre && !preParents.includes(pre)) preParents.push(pre);
}
preParents.forEach(p => p.classList.add("remark-code-has-line-highlighted"));
})(document);</script>
<script>
slideshow._releaseMath = function(el) {
var i, text, code, codes = el.getElementsByTagName('code');
for (i = 0; i < codes.length;) {
code = codes[i];
if (code.parentNode.tagName !== 'PRE' && code.childElementCount === 0) {
text = code.textContent;
if (/^\\\((.|\s)+\\\)$/.test(text) || /^\\\[(.|\s)+\\\]$/.test(text) ||
/^\$\$(.|\s)+\$\$$/.test(text) ||
/^\\begin\{([^}]+)\}(.|\s)+\\end\{[^}]+\}$/.test(text)) {
code.outerHTML = code.innerHTML; // remove <code></code>
continue;
}
}
i++;
}
};
slideshow._releaseMath(document);
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement('script');
script.type = 'text/javascript';
script.src = 'https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-MML-AM_CHTML';
if (location.protocol !== 'file:' && /^https?:/.test(script.src))
script.src = script.src.replace(/^https?:/, '');
document.getElementsByTagName('head')[0].appendChild(script);
})();
</script>
</body>
</html>