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FR: install the firecloud python library in the R image #89

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mbookman opened this issue Jan 13, 2020 · 1 comment
Open

FR: install the firecloud python library in the R image #89

mbookman opened this issue Jan 13, 2020 · 1 comment

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@mbookman
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mbookman commented Jan 13, 2020

Unless there is a recommended alternative method of accessing the firecloud API from R, please install the firecloud Python library. For R notebooks that access workspace, data, the approach we have used in the past is to use reticulate to call into the Python library.

I can see that the Python Dockerfile includes:

&& pip3 install --ignore-installed firecloud==0.16.25 \

would be great if the R Dockerfile did the same.

Installing reticulate in the R image would be helpful here as well.

@jmthibault79
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#93 adds reticulate

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