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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(annotateCellTypes)
export(appendMetadataToSeuratObject)
export(colorByGene)
export(colorByMarkerTable)
export(combineNormalize)
export(degGeneExpressionMarkers)
export(dotPlotMet)
export(dualLabeling)
export(filterQC)
export(filterSeuratObjectByMetadata)
export(harmonyBatchCorrect)
export(heatmapSC)
export(modScore)
export(nameClusters)
export(palantir_api_call)
export(plotMetadata)
export(processRawData)
export(reclusterFilteredSeuratObject)
export(reclusterSeuratObject)
export(tSNE3D)
export(violinPlot)
import(MAST)
import(RColorBrewer)
import(Seurat)
import(celldex)
import(colorspace)
import(cowplot)
import(data.table)
import(dplyr)
import(gdata)
import(ggplot2)
import(ggpubr)
import(ggrepel)
import(grid)
import(gridBase)
import(gridExtra)
import(harmony)
import(httr)
import(jsonlite)
import(parallel)
import(quantmod)
import(reshape2)
import(rlang)
import(scales)
import(tidyverse)
import(tools)
import(utils)
importFrom(ComplexHeatmap,pheatmap)
importFrom(RColorBrewer,brewer.pal)
importFrom(Seurat,AddMetaData)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,DotPlot)
importFrom(Seurat,Idents)
importFrom(Seurat,RunTSNE)
importFrom(Seurat,as.SingleCellExperiment)
importFrom(SingleR,SingleR)
importFrom(colorspace,RGB)
importFrom(colorspace,diverge_hcl)
importFrom(colorspace,heat_hcl)
importFrom(colorspace,hex)
importFrom(dendextend,rotate)
importFrom(dendsort,dendsort)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,case_when)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_color_identity)
importFrom(ggplot2,scale_y_reverse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggpubr,annotate_figure)
importFrom(ggpubr,get_legend)
importFrom(ggpubr,ggarrange)
importFrom(grDevices,colorRampPalette)
importFrom(grid,grid.draw)
importFrom(gridExtra,arrangeGrob)
importFrom(htmlwidgets,saveWidget)
importFrom(magrittr,"%>%")
importFrom(plotly,as_widget)
importFrom(plotly,ggplotly)
importFrom(plotly,plot_ly)
importFrom(reshape2,melt)
importFrom(scDblFinder,scDblFinder)
importFrom(scales,rescale)
importFrom(stats,as.hclust)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,quantile)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_sort)
importFrom(stringr,str_to_title)
importFrom(stringr,str_wrap)
importFrom(tibble,deframe)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_wider)