filemap.json

{
    "deconstructSigs": {
        "suffix": {
            "signatures_Rds": "signatures.Rds",
            "signatures_plot_Rds": "signatures.plot.Rds",
            "signatures_pieplot_Rds": "signatures_pieplot_Rds"
        }
    },
    "cnvkit": {
        "suffix": {
            "final_cns": "final.cns"
        }
    },
    "files": {
        "all_annotations_file" : "annotations.tsv",
        "all_seracare_annotations_file" : "annotations.SeraCare.tsv",
        "all_HapMapPool_annotations_file" : "annotations.HapMap-Pool.tsv",
        "samplesheet_output_file" : "samplesheet.tsv",
        "sample_coverage_file" : "coverage.samples.tsv",
        "interval_coverage_file" : "coverage.intervals.tsv",
        "signatures_weights_file" : "signatures.weights.tsv",
        "targets_annotations_file" : "targets.annotations.tsv",
        "tmb_file" : "tmb.tsv",
        "callable_loci_file" : "callable_loci.tsv",
        "git_json" : "git.json",
        "snp_overlap_file" : "snp-overlap.tsv"
    }
}