From e92d5c1aef86b0eb8b7adb00e8cfd8ba9d8d7c21 Mon Sep 17 00:00:00 2001 From: Juri Solodenko Date: Tue, 10 May 2022 11:55:01 +0200 Subject: [PATCH] Upgrade refs workflows (#28) * Fixes #26 Upgrade references (Projects, Observed data) Fixes #27 Upgrade workflows * upgrade Verapamil-Midazolam-DDI Co-authored-by: Yuri05 --- .github/workflows/MarkdownLinksCheck.yml | 12 + .github/workflows/SpellChecker.yml | 16 +- .github/workflows/XRefCheck.yml | 12 + .github/workflows/wordlist.txt | 1519 ------------------- .spellcheck.yml | 18 - Qualification/Input/qualification_plan.json | 10 +- Qualification/Workflow.m | 6 +- 7 files changed, 35 insertions(+), 1558 deletions(-) create mode 100644 .github/workflows/MarkdownLinksCheck.yml create mode 100644 .github/workflows/XRefCheck.yml delete mode 100644 .spellcheck.yml diff --git a/.github/workflows/MarkdownLinksCheck.yml b/.github/workflows/MarkdownLinksCheck.yml new file mode 100644 index 0000000..04ef226 --- /dev/null +++ b/.github/workflows/MarkdownLinksCheck.yml @@ -0,0 +1,12 @@ +name: Check Markdown links + +on: + push: + branches: + - review + +jobs: + markdown-link-check: + uses: Open-Systems-Pharmacology/Workflows/.github/workflows/MarkdownLinksCheck.yml@main + with: + folder-path: 'Qualification/report' diff --git a/.github/workflows/SpellChecker.yml b/.github/workflows/SpellChecker.yml index d468653..9e212be 100644 --- a/.github/workflows/SpellChecker.yml +++ b/.github/workflows/SpellChecker.yml @@ -1,18 +1,8 @@ name: Spellcheck on: - push: - branches: - - master - pull_request: - branches: - - master - + [push, pull_request] + jobs: Spellcheck: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - with: - ref: ${{ github.event.pull_request.head.sha }} - - uses: rojopolis/spellcheck-github-actions@afd46913df0b193a491614cd461be098a05b0a87 + uses: Open-Systems-Pharmacology/Workflows/.github/workflows/SpellChecker.yml@main diff --git a/.github/workflows/XRefCheck.yml b/.github/workflows/XRefCheck.yml new file mode 100644 index 0000000..1a4cf39 --- /dev/null +++ b/.github/workflows/XRefCheck.yml @@ -0,0 +1,12 @@ +name: XRefCheck + +on: + push: + branches: + - review + +jobs: + crossref-check-without-anchors: + uses: Open-Systems-Pharmacology/Workflows/.github/workflows/XRefCheck.yml@main + with: + ignored-folders: 'Qualification/Input' diff --git a/.github/workflows/wordlist.txt b/.github/workflows/wordlist.txt index 62ac8c9..e69de29 100644 --- a/.github/workflows/wordlist.txt +++ b/.github/workflows/wordlist.txt @@ -1,1519 +0,0 @@ -triazolam -fluvoxamine -aap -AAPS -aas -abb -Absorbability -AbsTol -Aburatani -Aciclovir -ACM -ACOS -Acta -actionToExecute -actp -actpo -AddAction -addir -addirg -addirr -addOutputInterval -addOutputs -addParameterPaths -AddPoint -addPoints -adjustbox -ADME -ae -ageMax -ageMin -ageParam -ageUnit -agg -agof -agofg -agofo -Ahonen -Ahr -ai -aintro -al -alfentanil -allAciclovirMolecules -AllOfSameType -allometric -allOutputs -allPKParameterSensitivitiesFor -allPKParametersFor -allPkParams -AllPlots -allPoints -allQuantityPaths -allUnits -anastomoses -antecubital -Anthracycline -anthropo -anthropometry -aod -ap -apkr -apkrg -apkrr -AppData -Appl -appveyor -aProperty -aps -ArrayExpress -ArterialBlood -arteriovenous -aryl -ascendingly -ASIN -ATAN -AUC -AUCinf -AUCR -AUMCs -autohidden -autoinhibition -AutoLayout -avascular -AvgUnit -AxesPredictedVsObserved -AxesResidualsOverTime -AxesResidualsVsObserved -AxesSettings -axy -Balakrishnan -Balthasar -basolateral -bended -benzoapyrene -Berezhkovskiy -Berezhkovsky -Bessems -Besten -BH -BigVial -bilayer -Bilayers -Biliary -Bioavailability -Biochem -Biochimica -Biokinetic -biologics -Biomed -Biomembrane -Biometrics -Biomolecular -Biopharm -Biopharmaceutics -Biophysica -biorelevant -Biosilico -Biotechnol -biotransformation -Bischoff -Blaauboer -Bladeren -BMC -BMI -bmiParam -BodyWeight -Bogaards -Bois -boolean -Boric -BPratio -Britz -Brodowsky -Bruelisauer -bs -Buehner -BuildingBlocks -Buist -Burghaus -Busse -BW -Bylayer -Caco -calculatePKAnalyses -callout -catabolism -catalytically -cdc -cDNA -ce -CETP -checkboxes -checkForNegativeValues -Chemother -Cheung -cholesteryl -Chosing -chronogenetics -cilostazol -Cimetidine -clarithromycin -ClassName -clearOutputIntervals -clearOutputs -clearPoints -Clewell -CLI -Clin -clogP -clrCall -Cmax -CmaxR -cmd -Coboeken -Combinatorial -combobox -comboboxes -ComparisonTimeProfile -ComparisonTimeProfilePlots -cooperativity -Costa -covariate -CRC -createIndividual -createIndividualCharacteristics -createPopulation -createPopulationCharacteristics -CreateQualificationReport -criterium -CSV -csvPKAnalysisPath -csvPopulationFile -csvResultsPath -CTRL -cumulated -CVODE -CVODES -Cyclosporin -cynomolgus -CYP -CYPs -cytochrome -cytochromes -cytosol -cytosolic -Dallmann -Danhof -Das -DashDot -dataframe -dataset -datasets -DDE -DDEs -DDI -DDIRatio -DDIRatioPlot -DDIRatioPlots -DDIRatioPlotsPredictedVsObserved 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-hyperref -IC -ico -ICRP -IgG -Ihara -ihre -img -imm -IModelCoreSimulation -impactful -importPKAnalysesFromCSV -importResultsFromCSV -importSensitivityAnalysisResultsFromCSV -inactivator -inactivators -individualCharacteristics -individualCharacterstics -IndividualId -individualIds -infMRTFractionAucLastToInf -infMRTThalfFractionAucLastToInfCLVssVd -Informa -initPKSim -InnerInvoke -InstallDir -Intellisense -intercellular -Interdiscip -interstital -intersystem -intervalName -intra -intracellular -introvideos -Inversed -InversedTime -io -ionizable -IQR -isConstant -isDistributed -ISEF -isFixedValue -isFormula -isoforms -IsPresent -isStateVariable -isTable -Itmay -Itra -Itraconazole -Jacobian -Jaeger -Jamei -Jang -Jantratid -Jongh -Joshi -json -kass -Kaumeier -Kawamura -Kawei -kcal -kcat -kcatby -Kd -kdeg -Keldenich -Kersting -Kesisoglou -KI -KIc -Kimura -kinact -kindey -kinteics -KIu -Kkinact -Kleine -klinisch -Klipid -Kneib -koff -kon -Konnen -Kprotein -Krbc -Krippendorf -Kuepfer -Kurosaki -Läbenberg -LADME -Lange -Langenbucher -lapply -lastpage -LateX -Leahy -Lehr -Lemaire -LEQ -Levenberg -Lienau -Linearization -linestyle -linestyles -lipophilic -Lipophilicity -Liposome -Liposomes -Lippert -Lippincott -livContainer -liverIntVolume -Livermore -liverVolume -livParam -llnl -LLOQ -lm -loadPopulation -loadSimulation -Lobo -logarithmically -logD -logics -logMA -LogNormal -logP -Loidl -Loizou -longtable -lowRes -Ludewig -Lustig -Mackensen -macromolecules -Madsen -Maier -ManualModel -Marquardt -MassTransferBloodPool -mathworks -maxC -MAXITER -maxt -mbdt -MBEI -mbp -MCR -md -Meister -Menten -menue -Metab -metabolization -metabolizations -metaData -Methoden -MethodsArticle -Michaelis -microarray -Microcirculation -microsomal -microsome -microsomes -microspecies -microspectrophotometry -microvascular -microvasculature -Mida -midazolam -Midorikawa -Mie -MikTex -minipig -minipigs -mL -mmHg -MoBi -Modelle -Moj -mol -MolarConcentration -MolecularWeight -moleculeInKid -moleculeOntogenies -MoleculeOntogeny -MoleculeProperties -Molweight -mongrale -monodisperse -Moxifloxacin -mRNA -MRT -MSV -mucosa -Mucosal -Multilamellar -Multiscale -multiselect -MxStep -myPopulation -MyProtein -myProteinOntogeny -Nachmann -NADPH -Naito -NCBI -nchs -nd -needspace -negativeValuesAllowed -Nelder -NEQ -Nestorov -Neuhaus -newValue -ng -NHANES -Nicholaou -Nicolaides -Niederalt -Niederberger -nifedipine -nih -NIRS -Nishimura -nlm -NLME -NMdat -nmol -Nodesize -Nonmem -novo -nP -Num -numberOfCores -numberOfIndividuals -oArmrea -ObservedData -ObservedDataRecordId -ObservedDataSets -ObserverSet -octanol -ODEInitialValues -ODEMain -ODEoptions -ODERHSFunction -ODEs -Olkkola -omeprazole -Ommen -ontogenies -OO -Opin -OrgPl -orscaled -os -OSP -OSPS -ospsuite -OSPSuiteException -ospuite -Osterholz -OutputMapping -OutputMappings -outputPath -OutputSchema -OutputSelections -oximetry -paracellular -parameterization -parameterizations -parameterName -parameterPath -parameterPaths -parentContainer -PBPK -PCR -pdf -pdflscape -PDP -Peles -Peng -perfused -pericentral -PeripheralVenousBlood -Periportal -permeabilities -permeations -pgfplots -Pgp -Pharm -Pharmacodyn -pharmacodynamic -Pharmacodynamics -Pharmacogenomics -Pharmacokinet -Pharmacokinetic -pharmacokinetics -pharmacokineticspharmacodynamics -Pharmacol -pharmacologically -pharmakokinetische -PharmSci -Phenols -phenotyping -phospholipid -phospholipids -php -physico -physicochemical -physicochemistry -Physiol -pKa -pkAnalyses -pkAnalysis -pkAnalysisLoaded -PKExcelImporter -PKj -pkml -pkmlSimulationFile -PKParameter -pKParameterFor -pkParameterName -PKParameterSensitivity -PKPD -PKRatio -PKRatioPlot -PKRatioPlots -PKRatios -pksim -placeins -PlotSettings -PlotType -pmol -PNA -png -po -Poggesi -pointwise -polydisperse -popFilePath -PopulationCharacteristics -populationResults -potentialSAParameters -potentialVariableParameterPathsFor -Poulin -Powerpoint -pre -preclinical -preconfigured -Pred -predictedVsObserved -predictivity -prefilter -pregnane -preselected -preterms -Preusser -Priori -propofol -proportionOfFemales -Proteomics -ProtocolSchemaItem -PSV -pts -pubdb -px -PXR -PxSA -Qorgan -QSP -QualificationPlan -qualificationrunner -quantitiesOrPaths -quantityPath -QuantityPKParameter -quartile -Radioecology -Radiological -Rbuildce -rClr -README -recirculation -recombinant -recombinantly -redisplayed -redisplaying -RelTol -removePoint -Remy -renally -Renkin -repo -Reppas -residualsOverTime -residualsVsObserved -restartSolver -resultOfAFunction -resultsData -resultsLoaded -resultsPath -resultsTime -resultsValues -rhCYP -RHS -RHSFormula -rifampicin -Rippe -Rizk -RMS -RND -Rodrigues -Röhring -Rostami -RRGGBB -RtmpY -RunAsync -runSensitivityAnalysis -runSimulation -Runtime -sa -Sandt -saResult -saResultLoaded -saResultPath -Sargentini -Satoh -saturable -Sawamato -sbj -SBML -scaleParameterValues -scaler -Scand -scatterers -Schlender -Schmeck -Schmitt -Schneckener -Schoenlein -Schöttner -Schwarzenbach -Schwarzmaier -scrollbars -SCum -SDZ -SectionId -sectsty -selectable -SensitivityAnalysis -sensitivityAnalysisConfig -SensitivityAnalysisResults -sep -Serban -SetA -setMoleculeInitialValues -setOutputInterval -setParameterValues -setParameterValuesByPath -setPoints -Sevestre -Shampine -sharable -SHFT -showProgress -Shumaker -Sidhu -Siegmund -sigmoid -sigmoidal -silico -Silvermann -simFilePath -SimModel -SimModelManager -simr -SimResults -simRunOptions -simTree -SimulationControl -SimulationDDI -SimulationDuration -Simulationen -SimulationParameters -SimulationPKAnalyses -SimulationResults -simulationRunner -simulationRunOptions -SimulationSettings -SINH -sinusoids -siunitx -Sj -Solodenko -SolverSettings -SpaceOrganismTemplate -spectrometric -Spendiff -Springer -SQRT -src -SRND -ssd -Stahlhofen -StandardOntogeny -StartTime -Stass -StateVariable -stateVariableParam -Steimer -stepwise -stoichiometric -stoichiometry -Stotal -Strougo -Studien -subcompartment -subcompartments -subcontainer -subcontainers -subfolder -subfolders -submenu -submodel -subpopulations -subtree -subviews -Sufentanil -Suillerot -SumMetabolites -superfamilies -supportfiles -Surg -Swiatek -Syst -TableFormula -tableParam -TableParameter -tabu -Tanaka -TANH -TargetSimulations -targetUnit -tcolorbox -tD -tDEnd -TDI -tDj -tDlast -Telle -tEnd -tEndAUC -tEndThalfAUC -Terenji -textcomp -th -Thalf -Theil -Thelen -Theophylline -Theor -Ther -thetable -threeparttablex -ths -tikz -TimeProfile -TimeUnit -Tingleff -Tlag -tlast -toBaseUnit -TOC -toDisplayUnit -tooltip -totalSensitivityThreshold -toUnit -Toxicol -Tozer -transcapillary -transcellular -transcriptional -TRANSIL -translational -TSmax -tstart -Tsutsumi -txt -typora -Tytgat -uc -UCRL -Ueffing -UGT -UI -uk -un -Uncheck -Uncompetitive -und -undissociated -Undock -ungroup -UniGene -unlink -unlinked -Unserer -unstirred -unticking -untransformed -UseDerivedValues -UseJacobian -userdefinedsnippets -USERID -Vakalopoulos -valueAt -ValuePoint -ValuePointAlreadyExistsForPointException -variabilities -variated -vasc -vascularization -VCH -Vd -VenousBlood -Vergin -Verlag -Vis -visualstudio -vitro -vitrosystem -vivo -Vmax -Voith -volumeParams -Vossen -VSCode -Vss -Watelet -WB -Weibull -weightMax -weightMin -weightUnit -Weinheim -Wendl -wikipedia -Willmann -withcellular -workstep -Wurthwein -www -xcolor -XDimension -Xenobiotica -xenografts -xls -xlsx -xml -xtol -xValues -XYZ -Yaguti -Yakugaku -Yamamoto -Yaroslavsky -Yassen -Yeo -Yoshitsugu -yout -yValues -Zasshi -Zeit -Zhu -Zischka -zonated -zonation -Zwitterions -OSPSuite -csv -mucosal -rhsFormula -rhs -simulationResults -outputSchema -endTime -outputSchema -startTime -populationCharacteristics -pkParameter -PKAnalyses -outputSelections -SAResult -pharmacokinetic -multiscale -Anwendung -nhanes -ncbi -unigene -de -itraconazole -Emax -pharmacodynamics -bioavailability -biliary -glomerular -lipophilicity -endosome -Ki -NonMem -userid -jacobian -uncheck -Ctrl -QualificationRunner -educt -biometrics -tDi -dDi -PKSim -hematocrit -pka -periportal -uncompetitive -addfd -anthropometric -cfa -cfc -dapagliflozin -doi -DOI -DrugBank -Epub -Jaehde -JF -Krauss -Pharmacometrics -pK -psp -Teutonico -CPT -Aaltonen -Aantaa -Aarons -Abernethy -Acylcarnitines -Agúndez -Ahn -Albet -Alfaro -alprazolam -Alprazolam -ambrisentan -Ambrosius -Anaesthesiol -Analg -Anesth -Antal -antimycotics -Aranko -Ari -Arold -Arzneimittel -Aschmann -Aubas -Aubert -azithromycin -Backman -Barbarash -Bartkowski -Bateman -Batenhorst -Bauman -Baumann -Bedynek -Benítez -Benyunes -Berl -Bertino -Biochim -Biomarkers -Biophys -BJ -Bjornsson -Bleiber -Blyden -Bödigheimer -Bodmer -Boerner -Boutboul -Bowdle -Breen -Brejda -Brockmöller -Brudny -Buclin -Burhenne -Burstein -Cai -canadensis -Carls -Cheboyina -chenodeoxycholic -Cho -Choi -Chu -cimetidine -coadministered -coadministration -codebases -cohosh -Copenh -Counihan -Crafford -CTX -Cucchia -DataID -Desager -deuterated -DG -dienogest -diltiazem -Divoll -drospirenone -DS -Duan -Durol -Dyk -Eap -efavirenz -EJ -EL -Electrocardiographic -Ereshefsky -ethinylestradiol -etonogestrel -Evers -filmcoated -Fleishaker -fluconazole -fluoxetine -Fluvoxamine -Forschung -Fricke -Friedrich -Furukori -Galetin -Gashaw -genotype -Gershkovich -GH -GL -Golay -Goldammer -goldenseal -Gorski -Gotkine -Gotschall -GPLv -Graf -Greenblatt -Grignaschi -Groeneveld -Gurley -Haefeli -Haehner -Hamman -Harats -Harmatz -Hartsfield -Harvengt -Haschke -Hatley -Hehman -Hellwig -Herrero -Hiller -Hilligoss -Himberg -Höchel -Hoffer -Hoffmann -Hoven -Hu -Huffnagle -Hulhoven -Hulst -Hustert -Hydrastis -Hydroxycortisol -Hydroxylated -IJ -Imai -inducibility -interindividual -intraduodenal -Ishizaki -Isoherranen -JA -JB -JC -Jedamzik -JH -Jin -JJ -JK -JL -JM -Johan -JS -JT -JW -JY -Kaneko -Kanto -Kashuba -Katzenmaier -kava -Kazierad -KE -Kearns -ketoconazole -KH -Kharasch -Kienlen -Kirchheiner -Kivistö -Klöppel -Kondo -Kondos -Kotegawa -Krähenbühl -Kroboth -Kulawy -Kunze -Larijani -Laufen -Leeder -Leitersdorf -Leitold -levonorgestrel -Levron -Liberman -lignocaine -Lim -Liu -LJ -Locniskar -Lutz -Luurila -LY -macrolide -maleate -Markert -Márquez -Martínez -Matthee -Mautz -MEGX -Meiner -Mertzanis -methysticum -MH -microdose -microg -Mikus -miosis -MJ -Moltke -mononuclear -Moschitto -Mukadam -Nafziger -Nakano -nefazodone -Neuvonen -nocte -norethindrone -Nowotn -Ochs -Ohashi -Ohkubo -Okialda -Okudaira -O'Mara -Osanai -OSPy -Otani -perioperative -Pharmacogenetics -Pharmacometabolomics -Phimmasone -PJ -Pourbaix -prespecified -Pritchett -propranolol -Prueksaritanont -pupillary -QD -QID -Quinney -Railkar -ranitidine -Reitman -Rhoades -ribonucleic -Riecke -rifampin -Rifampin's -RJ -RL -Rocci -Röder -Rottmann -Roupe -RW -Saarnivaara -Salonen -Scavone -Scharpf -Schmider -Seidemann -Semisimultaneous -SG -Shader -Shaish -Shand -Sheffels -simvastatin -SLCO -Sorich -stearate -Stoch -Stubbert -Stypinski -Sugawara -Swart -SX -SY -Szalat -Tatosian -Tay -Telenti -temazepam -Templeton -terbinafine -Thaden -Thummel -TID -titrated -Touw -Triazolam -triazolobenzodiazepines -Vangveravong -Vannaprasaht -Varhe -Venkatasubramanian -Verapamil -Villikka -von -vx -Wenk -Whittington -Wiesinger -Wildfeuer -Yabut -Yasui -Yeates -Yi -Yu -YW -YZ -Zajic -Zeng -Zhou -Zimmermann -Zoller -Zullino -fluvoxamine -triazolam -verapamil -Andersson -Bäckström -Bertilsson -Björkhem -Bredberg -Casjens -Chattopadhyay -Diczfalusy -glucuronidation -hydroxycholesterol -Kanacher -Kearney -Ligges -Massetto -Mosgau -Nii -Nylén -Ploeger -Rönquist -Schultze -vilaprisan -Isohanni -Palkama diff --git a/.spellcheck.yml b/.spellcheck.yml deleted file mode 100644 index 462c4a8..0000000 --- a/.spellcheck.yml +++ /dev/null @@ -1,18 +0,0 @@ -matrix: -- name: Markdown - aspell: - lang: en - dictionary: - wordlists: - - .github/workflows/wordlist.txt - encoding: utf-8 - pipeline: - - pyspelling.filters.markdown: - - pyspelling.filters.html: - comments: false - ignores: - - code - - pre - sources: - - '**/*.md' - default_encoding: utf-8 diff --git a/Qualification/Input/qualification_plan.json b/Qualification/Input/qualification_plan.json index 8f58eba..1a08237 100644 --- a/Qualification/Input/qualification_plan.json +++ b/Qualification/Input/qualification_plan.json @@ -1,5 +1,5 @@ { - "$schema": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/QualificationPlan/v2.2/schemas/OSP_Qualification_Plan_Schema.json", + "$schema": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/QualificationPlan/v2.3/schemas/OSP_Qualification_Plan_Schema.json", "Projects": [ { "Id": "Alfentanil", @@ -23,7 +23,7 @@ }, { "Id": "Erythromycin", - "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Erythromycin-Model/v1.2/Erythromycin-Model.json" + "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Erythromycin-Model/v1.3/Erythromycin-Model.json" }, { "Id": "Fluconazole", @@ -31,7 +31,7 @@ }, { "Id": "Fluvoxamine", - "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Fluvoxamine-Model/v1.1/Fluvoxamine-Model.json" + "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Fluvoxamine-Model/v1.2/Fluvoxamine-Model.json" }, { "Id": "Itraconazole", @@ -6161,7 +6161,7 @@ }, { "Id": "Verapamil-Midazolam-DDI", - "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Verapamil-Midazolam-DDI/v1.2/Verapamil-Midazolam-DDI.json", + "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Verapamil-Midazolam-DDI/v1.3/Verapamil-Midazolam-DDI.json", "BuildingBlocks": [ { "Type": "Compound", @@ -10158,7 +10158,7 @@ "ObservedDataSets": [ { "Id": "DDI Ratios", - "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Database-for-observed-data/v1.3/DDI.csv", + "Path": "https://raw.githubusercontent.com/Open-Systems-Pharmacology/Database-for-observed-data/v1.4/DDI.csv", "Type": "DDIRatio" } ], diff --git a/Qualification/Workflow.m b/Qualification/Workflow.m index 8dd016c..e996415 100644 --- a/Qualification/Workflow.m +++ b/Qualification/Workflow.m @@ -8,9 +8,9 @@ % -------------------------------------------------------------- % replace qualificationRunnerFolder and markdownJoinerFolder with your paths -qualificationRunnerFolder = 'C:\Software\QualificationRunner_10.0.59'; -markdownJoinerFolder = 'C:\Software\markdown-joiner'; -PKSimPortableFolder = 'C:\Software\PK-Sim_10.0.255'; +qualificationRunnerFolder = 'C:\Software\QualificationRunner_11.0.9999'; +markdownJoinerFolder = 'C:\Software\markdown-joiner_1.2.0.8'; +PKSimPortableFolder = 'C:\Software\PK-Sim_11.0.9999'; % -------------------------------------------------------------- % replace baseDir and qualificationPlanName with your paths