diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index 1c97c88..4ad7212 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -6,7 +6,7 @@ on: - feature/ci-cd-pipeline jobs: - test-hpc: + Benchmarking-pipeline: runs-on: ubuntu-latest steps: @@ -45,8 +45,8 @@ jobs: - name: Fetch Output run: | - scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output/job_output.txt job_output.txt - scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output/job_error.txt job_error.txt + scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output.txt job_output.txt + scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_error.txt job_error.txt - name: Upload Output as Artifact uses: actions/upload-artifact@v4 diff --git a/benchmark/config.slurm b/benchmark/config.slurm index f1f2de8..0294e24 100644 --- a/benchmark/config.slurm +++ b/benchmark/config.slurm @@ -1,7 +1,8 @@ #!/bin/bash #SBATCH --job-name=msstats_benchmark_job -#SBATCH --output=/work/VitekLab/Projects/Benchmarking/job_output/job_output.txt -#SBATCH --error=/work/VitekLab/Projects/Benchmarking/job_output/job_error.txt +#SBATCH --chdir=/work/VitekLab/Projects/Benchmarking/ +#SBATCH --output=job_output.txt +#SBATCH --error=job_error.txt #SBATCH --time=01:00:00 # Set the maximum run time #SBATCH --ntasks=1 # Number of tasks (one process) #SBATCH --cpus-per-task=8 # Use 8 CPU cores for the task