Cannot Run Caiman Workflow Because of Dependencies Problem.

[tsuchiyama-araya]

【Description】

During Running Workflow with Algorithm of Caiman I get an error.
Based on the Error log mostly it's dependencies causing to error.

【Already did】

• Update Conda Environment. By using "conda update --all". It still shows the same error
• Check if Python Version is not compatible. But Python 3.8.20 is still compatible with the libraries so there should be no problem.

Error Shown in Log. (Not Full Log)

2024-10-21 11:16:05 Package libxcb conflicts for:
2024-10-21 11:16:05 python=3.8 -> xorg-libx11[version='>=1.8.9,<2.0a0'] -> libxcb[version='>=1.15,<1.16.0a0|>=1.16,<2.0.0a0|>=1.17.0,<2.0a0']
2024-10-21 11:16:05 scikit-image=0.19 -> pillow[version='>=6.1.0,!=7.1.0,!=7.1.1,!=8.3.0'] -> libxcb[version='>=1.13,<1.14.0a0|>=1.15,<1.16.0a0|>=1.16,<2.0.0a0|>=1.17.0,<2.0a0']
2024-10-21 11:16:05 
2024-10-21 11:16:05 Package setuptools conflicts for:
2024-10-21 11:16:05 cython -> setuptools
2024-10-21 11:16:05 python=3.8 -> pip -> setuptools
2024-10-21 11:16:05 scikit-image=0.19 -> dask-core[version='>=1.0.0,!=2.17.0'] -> setuptools[version='<60.0.0']
2024-10-21 11:16:05 caiman[version='>=1.9.9,<=1.9.12'] -> ipykernel -> setuptools[version='<60.0.0|>=18.5|>=60|>=42|>=42,<61']
2024-10-21 11:16:05 
2024-10-21 11:16:05 Package numpy conflicts for:
2024-10-21 11:16:05 caiman[version='>=1.9.9,<=1.9.12'] -> numpy[version='>=1.19.5,<2.0a0|>=1.20.3,<2.0a0|>=1.21.6,<2.0a0']
2024-10-21 11:16:05 caiman[version='>=1.9.9,<=1.9.12'] -> bokeh -> numpy[version='1.10.*|1.11.*|>=1.0|>=1.0,<2.0a0|>=1.11.3,<2.0.0a0|>=1.11.3|>=1.11.3,<2.0a0|>=1.16.6,<2.0a0|>=1.16|>=1.23.5,<2.0a0|>=1.26.4,<2.0a0|>=1.26.3,<2.0a0|>=1.21.5,<2.0a0|>=1.26.0,<2.0a0|>=1.22.3,<2.0a0|>=1.7.1|>=1.16,<2.0a0|>=1.21.2,<2.0a0|>=1.14.6,<2.0a0|>=1.21,<3|>=1.19,<3|>=1.22.4,<2.0a0|>=1.26.2,<2.0a0|>=1.23.4,<2.0a0|>=1.21.4,<2.0a0|>=1.18.5,<2.0a0|>=1.17.5,<2.0a0|>=1.19.4,<2.0a0|>=1.16.5,<2.0a0|>=1.19.2,<2.0a0|>=1.21,<2.0a0|>=1.21|>=1.21,<2|>=1.23,<2|>=1.22,<2|>=1.16,<2|<2.0a0|1.21.*|1.16.*|>=1.9.3,<2.0a0|>=1.8|1.13.*|1.12.*|1.9.*|>=1.23,<2.0a0|>=1.20.2,<2.0a0|>=1.15.4,<2.0a0|>=1.13.3,<2.0a0|>=1.12.1,<2.0a0|>=1.9|>=1.22.4|>=1.18.4,<2.0a0|>=1.18.1,<2.0a0|>=1.11.*|>=1.9.*|>=1.11|>=1.7|>=1.19,<2.0a0|>=1.19|>=1.17|>=1.18|>=1.18,<2.0|>=1.16,<1.24|>=1.16,<1.23|>=1.16,<1.22|>=1.16,<1.21|>=1.20.0,<2.0a0|>=1.20.0|>=1.22|>=1.20|>=1.22,<2.0a0|<1.25|>=1.23.5,<1.29|>=1.26.4,<1.29|>=1.22.3,<1.29|>=1.22.4,<1.29|>=1.26.2,<1.28|>=1.21.5,<1.28|>=1.23.5,<1.28|>=1.26.0,<1.28|>=1.19.5,<1.27.0|>=1.23,<1.27.0|>=1.21,<1.27.0|>=1.21,<1.26.0|>=1.23,<1.26.0|>=1.19,<1.26.0|>=1.19,<1.25.0|>=1.21,<1.25.0|>=1.21,<1.23|>=1.16.6,<1.23.0|>=1.21.2,<1.23.0|>=1.15.1,<2.0a0|<2.4|>=1.23.5|<2.3|>=1.23.5,<2.3|>=1.22.4,<2.3|>=1.22.4,<1.28|>=1.26.4,<1.28|>=1.26.3,<1.28|>=1.21.6,<1.28|>=1.21.6,<1.27|>=1.23.5,<1.27|>=1.20.3,<1.27|>=1.21.6,<1.26|>=1.23.4,<1.26|>=1.20.3,<1.26|>=1.20.3,<1.25|>=1.21.6,<1.25|>=1.20.3,<1.23|>=1.21.6,<1.23|>=1.19.2|>=1.15.1|>=1.19.2,<2.0.0a0|1.8.*']
2024-10-21 11:16:05 numpy=1.22
2024-10-21 11:16:05 
2024-10-21 11:16:05 Package pypy3.6 conflicts for:
2024-10-21 11:16:05 scikit-image=0.19 -> cytoolz[version='>=0.7.3'] -> pypy3.6[version='>=7.3.1|>=7.3.2|>=7.3.3']
2024-10-21 11:16:05 cython -> python[version='>=3.6,<3.7.0a0'] -> pypy3.6[version='7.3.*|7.3.0.*|7.3.1.*|7.3.2.*|7.3.3.*']
2024-10-21 11:16:05 cython -> pypy3.6[version='>=7.3.1|>=7.3.2|>=7.3.3']
2024-10-21 11:16:05 caiman[version='>=1.9.9,<=1.9.12'] -> bokeh -> pypy3.6[version='>=7.3.1|>=7.3.2|>=7.3.3']

[milesAraya]

I had the same issue.
checked develop-main, main branches.
Likely cause, addition of new libraries to pyproject.toml

Suggestions

• go back to previous versions of pyproject.toml to find out the bug cause
• upgrade python/caiman/suite2p versions