packages.list.txt

abacas
abyss
acedb
adapterremoval
aevol
alien-hunter
alter-sequence-alignment
altree
amap-align
ampliconnoise
anfo
aragorn
arb
arden
art-nextgen-simulation-tools
artemis
artfastqgenerator
autodock-vina
autodocksuite
autodocktools
ball
bamtools
barrnap
bcftools
beast-mcmc
bedtools
blasr
blimps
bowtie
bowtie2
boxshade
brig
bwa
cassiopee
cd-hit
cdbfasta
cgview
circlator
circos
clearcut
clonalframe
clustalo
clustalw
clustalx
cluster3
coils
concavity
conservation-code
cufflinks
daligner
dascrubber
dazzdb
dialign
dialign-t
discosnp
disulfinder
dnaclust
dssp
ea-utils
edtsurf
eigensoft
embassy-domainatrix
embassy-domalign
embassy-domsearch
embassy-phylip
emboss
epcr
exonerate
falcon
fastaq
fastdnaml
fastlink
fastml
fastqc
fasttree
fastx-toolkit
ffindex
figtree
filo
fitgcp
flexbar
freecontact
fsm-lite
gamgi
garlic
gasic
gbrowse
gdpc
genometools
gentle
gff2aplot
gff2ps
giira
glam2
gmap
graphlan
grinder
gromacs
gubbins
harvest-tools
hhsuite
hilive
hmmer
hmmer2
htslib
hyphy
idba
igv
infernal
ipig
iqtree
jaligner
jalview
jellyfish
jmodeltest
jmol
kalign
kineticstools
kissplice
kmer
kraken
last-align
lefse
libfastahack
librg-utils-perl
libsmithwaterman
libssw
libvcflib
logol
loki
ltrsift
macs
maffilter
mafft
mapdamage
mapsembler2
maq
maqview
massxpert
mauve-aligner
melting
metaphlan2
metastudent
mgltools-cadd
mgltools-pmv
mgltools-vision
mhap
microbegps
microbiomeutil
minia
mipe
mira
mlv-smile
mothur
mrbayes
mummer
murasaki
muscle
mustang
nanopolish
ncbi-blast+
ncbi-seg
ncbi-tools6
neobio
njplot
norsnet
norsp
openms
paml
paraclu
parsinsert
parsnp
pbalign
pbbarcode
pbdagcon
pbgenomicconsensus
pbh5tools
pbsuite
pdb2pqr
perlprimer
perm
phipack
phylip
phyml
phyutility
picard-tools
placnet
plasmidomics
plast
plink
plink1.9
poa
populations
poretools
prank
predictnls
predictprotein
prime-phylo
primer3
proalign
probabel
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd
profphd-utils
proftmb
progressivemauve
proteinortho
prottest
pycorrfit
pymol
pynast
pyscanfcs
python-cogent
python-cutadapt
python-dendropy
qiime
r-bioc-biostrings
r-bioc-cummerbund
r-bioc-edger
r-bioc-gviz
r-bioc-hilbertvis
r-bioc-limma
r-bioc-rtracklayer
r-cran-adegenet
r-cran-adephylo
r-cran-ape
r-cran-distory
r-cran-genabel
r-cran-phangorn
r-cran-qtl
r-cran-seqinr
r-cran-treescape
r-cran-vegan
r-other-mott-happy
raccoon
rasmol
raster3d
rate4site
raxml
ray
readseq
relion
repeatmasker-recon
reprof
rna-star
rnahybrid
roary
rtax
saint
samtools
seaview
seer
seq-gen
seqan
seqtk
sga
sibsim4
sickle
sift
sigma-align
sim4
smalt
#smrtanalysis
snap
sniffles
snp-sites
soapdenovo
soapdenovo2
spades
sprai
spread-phy
squizz
sra-sdk
ssake
stacks
staden
staden-io-lib
subread
surankco
t-coffee
tantan
theseus
tigr-glimmer
tm-align
tophat
transtermhp
tree-puzzle
treeview
treeviewx
trimmomatic
uc-echo
ugene
varscan
vcftools
velvet
velvetoptimiser
vsearch
wise
zalign