README.rst

This django application has been archived - django-misa functionality now within django-mogi and used for DMAdb - see https://dmadb.readthedocs.io/en/latest/

misa

ISA organisation for metabolomic studies with Django

Further documentation available on ReadTheDocs

Quick start

1. Add "misa" and django application dependencies to your INSTALLED_APPS setting like this (misa should come before gfiles and mbrowse):

   INSTALLED_APPS = [
       ...
       'misa',
       'mbrowse',
       'gfiles',
   
       'django_tables2',
       'django_tables2_column_shifter',
       'django_filters',
       'bootstrap3',
       'django_sb_admin',
       'dal',
       'dal_select2',
   ]
   

2. Include the polls URLconf in your project urls.py like this:

   url(r'^', include('gfiles.urls')),
   url('mbrowse/', include('mbrowse.urls')),
   url('misa/', include('misa.urls')),
   

3. Run python manage.py migrate to create the misa models.

4. Start the development server and visit http://127.0.0.1:8000/misa/ilist/

5. Register http://127.0.0.1:8000/register/ and login http://127.0.0.1:8000/login/

5. Create an investigation http://127.0.0.1:8000/icreate/, study http://127.0.0.1:8000/icreate/, assay http://127.0.0.1:8000/icreate/acreate
6. Upload data to an assay http://127.0.0.1:8000/upload_assay_data_files/[assay-id]/
7. Add a protocol e.g. Chromatography protocol http://127.0.0.1:8000/cp_create
8. Add ontology information http://127.0.0.1:8000/search_ontologyterm