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Bedhost: the user defined BED set download endpoint enhancement #87

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xuebingjie1990 opened this issue Feb 1, 2023 · 1 comment
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enhancement New feature or request

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@xuebingjie1990
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xuebingjie1990 commented Feb 1, 2023

Users can define BED set by select and add bed files to the "BEDset cart" from the search result.
Users should be able to download the user defined BED set with download endpoint.
We use to have an endpoint that generate a .txt file of list of bedfile path. So user can bulk download bed files in the BED set with instructions given from the UI, for example: wget -i my_bedset_http.txt and cat my_bedset_s3.txt | parallel aws s3 cp {} <output_dir>

enhancement:

  1. We would like the users to be able to download BED set as zip file
  2. We would like the backend be able to processed the user defined BED set, and insert the stats into the database
@xuebingjie1990 xuebingjie1990 self-assigned this Feb 1, 2023
@xuebingjie1990 xuebingjie1990 changed the title Bedbost: the user defined BED set download endpoint is broken Bedbost: the user defined BED set download endpoint enhancement Feb 3, 2023
@xuebingjie1990 xuebingjie1990 added the enhancement New feature or request label Feb 3, 2023
@nsheff nsheff transferred this issue from databio/bedbase Feb 17, 2024
@nsheff nsheff changed the title Bedbost: the user defined BED set download endpoint enhancement Bedhost: the user defined BED set download endpoint enhancement Mar 1, 2024
@nsheff nsheff added this to the v0.4.0 milestone Mar 14, 2024
@khoroshevskyi
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We should work more on this issue, as we don't have good way of doing it.

Idea: what if we will create temporary bedset in the database and then use bbconf to download it?

@khoroshevskyi khoroshevskyi modified the milestones: v0.4.0, v0.5.0 Apr 9, 2024
@khoroshevskyi khoroshevskyi removed this from the v0.5.0 milestone May 30, 2024
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