README.md

serialbox2hdf5

Convert Serialbox data to HDF5.

Quickstart

0. Load required modules (e.g. for ECMWF workstations)

module load python3
module load hdf5
module load cmake

1. Create virtual environment

python3 -m venv venv
. venv/bin/activate

2. Install HDF5

pip install --upgrade pip wheel
pip install h5py

3. Install Serialbox

git clone https://github.com/gridtools/serialbox.git
mkdir serialbox/build
cd serialbox/build
cmake ../ -DSERIALBOX_ENABLE_PYTHON=ON -DCMAKE_INSTALL_PREFIX=../../venv
cmake --build .
cmake --build . --target install
cd ../..

4. Run

PYTHONPATH=venv/python:$PYTHONPATH python3 serialbox2hdf5.py