setupAll.sh

#!/bin/bash


echo "Building HH-suite... "

cd ${LRRpredictor_HOME}/hh-suite/

git checkout LRRpredictor && git pull

mkdir lib
cd lib

git clone https://github.com/eliza-m/ffindex_soedinglab.git ffindex
cd ffindex
git checkout 360e417

cd ../../
mkdir build
mkdir install
cd build

cmake -DCMAKE_BUILD_TYPE=RelWithDebInfo -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX=../install ..
make -j$(nproc) 

echo "Building HH-suite... DONE "

echo "Installing HH-suite..."

make install

echo "Installing HH-suite... DONE"





echo "Building RaptorX-Property..."

cd ${LRRpredictor_HOME}/RaptorX_Property_Fast/
git checkout LRRpredictor && git pull

cd source_code
make -j$(nproc)

cd ../
./setup.pl

echo "Building RaptorX-Property... DONE "




echo "Downloading LRRpredictor training data..."

cd $LRRpredictor_HOME/fullTraining/

wget old.biochim.ro/ib/departments/strbiochem/LRRpred/fullTraining_pkls.tar.gz
tar -xzf fullTraining_pkls.tar.gz
mv fullTraining_pkls/* ./
rm fullTraining_pkls.tar.gz
rmdir fullTraining_pkls



if [ "$isFullDownloadSet" == "TRUE" ];
then
	cd $LRRpredictor_HOME/crossValidation/
	wget old.biochim.ro/ib/departments/strbiochem/LRRpred/CrossValidation_pkls.tar.gz
	tar -xzf CrossValidation_pkls.tar.gz
	mv CrossValidation_pkls/* ./
	rm CrossValidation_pkls.tar.gz
	rmdir CrossValidation_pkls

	cd $LRRpredictor_HOME/test/
	wget old.biochim.ro/ib/departments/strbiochem/LRRpred/test_pkls.tar.gz
	tar -xzf test_pkls.tar.gz
	mv test_pkls/* ./
	rm test_pkls.tar.gz
	rmdir test_pkls

fi



echo "Downloading LRRpredictor training data... DONE"

cd $LRRpredictor_HOME
mkdir results