diff --git a/package.json b/package.json
index f83f3656..b11a08fa 100644
--- a/package.json
+++ b/package.json
@@ -17,7 +17,7 @@
   },
   "dependencies": {
     "csx": "10.0.2",
-    "cytoscape": "3.28.1",
+    "cytoscape": "3.29.2",
     "cytoscape-cose-bilkent": "4.1.0",
     "react": "19.0.0-rc-f994737d14-20240522",
     "react-cytoscapejs": "2.0.0",
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index 12c7a5e8..d54a6205 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -16,17 +16,17 @@ importers:
         specifier: 10.0.2
         version: 10.0.2
       cytoscape:
-        specifier: 3.28.1
-        version: 3.28.1
+        specifier: 3.29.2
+        version: 3.29.2
       cytoscape-cose-bilkent:
         specifier: 4.1.0
-        version: 4.1.0(cytoscape@3.28.1)
+        version: 4.1.0(cytoscape@3.29.2)
       react:
         specifier: 19.0.0-rc-f994737d14-20240522
         version: 19.0.0-rc-f994737d14-20240522
       react-cytoscapejs:
         specifier: 2.0.0
-        version: 2.0.0(cytoscape@3.28.1)(react@19.0.0-rc-f994737d14-20240522)
+        version: 2.0.0(cytoscape@3.29.2)(react@19.0.0-rc-f994737d14-20240522)
       react-dom:
         specifier: 19.0.0-rc-f994737d14-20240522
         version: 19.0.0-rc-f994737d14-20240522(react@19.0.0-rc-f994737d14-20240522)
@@ -731,8 +731,8 @@ packages:
     peerDependencies:
       cytoscape: ^3.2.0
 
-  cytoscape@3.28.1:
-    resolution: {integrity: sha512-xyItz4O/4zp9/239wCcH8ZcFuuZooEeF8KHRmzjDfGdXsj3OG9MFSMA0pJE0uX3uCN/ygof6hHf4L7lst+JaDg==}
+  cytoscape@3.29.2:
+    resolution: {integrity: sha512-2G1ycU28Nh7OHT9rkXRLpCDP30MKH1dXJORZuBhtEhEW7pKwgPi77ImqlCWinouyE1PNepIOGZBOrE84DG7LyQ==}
     engines: {node: '>=0.10'}
 
   cz-conventional-changelog@3.3.0:
@@ -1086,9 +1086,6 @@ packages:
     resolution: {integrity: sha512-F/1DnUGPopORZi0ni+CvrCgHQ5FyEAHRLSApuYWMmrbSwoN2Mn/7k+Gl38gJnR7yyDZk6WLXwiGod1JOWNDKGw==}
     hasBin: true
 
-  heap@0.2.7:
-    resolution: {integrity: sha512-2bsegYkkHO+h/9MGbn6KWcE45cHZgPANo5LXF7EvWdT0yT2EguSVO1nDgU5c8+ZOPwp2vMNa7YFsJhVcDR9Sdg==}
-
   homedir-polyfill@1.0.3:
     resolution: {integrity: sha512-eSmmWE5bZTK2Nou4g0AI3zZ9rswp7GRKoKXS1BLUkvPviOqs4YTN1djQIqrXy9k5gEtdLPy86JjRwsNM9tnDcA==}
     engines: {node: '>=0.10.0'}
@@ -2856,15 +2853,12 @@ snapshots:
     dependencies:
       csstype: 2.6.21
 
-  cytoscape-cose-bilkent@4.1.0(cytoscape@3.28.1):
+  cytoscape-cose-bilkent@4.1.0(cytoscape@3.29.2):
     dependencies:
       cose-base: 1.0.3
-      cytoscape: 3.28.1
+      cytoscape: 3.29.2
 
-  cytoscape@3.28.1:
-    dependencies:
-      heap: 0.2.7
-      lodash: 4.17.21
+  cytoscape@3.29.2: {}
 
   cz-conventional-changelog@3.3.0(@types/node@20.14.8)(typescript@5.3.3):
     dependencies:
@@ -3233,8 +3227,6 @@ snapshots:
 
   he@1.2.0: {}
 
-  heap@0.2.7: {}
-
   homedir-polyfill@1.0.3:
     dependencies:
       parse-passwd: 1.0.0
@@ -3763,9 +3755,9 @@ snapshots:
       iconv-lite: 0.4.24
       unpipe: 1.0.0
 
-  react-cytoscapejs@2.0.0(cytoscape@3.28.1)(react@19.0.0-rc-f994737d14-20240522):
+  react-cytoscapejs@2.0.0(cytoscape@3.29.2)(react@19.0.0-rc-f994737d14-20240522):
     dependencies:
-      cytoscape: 3.28.1
+      cytoscape: 3.29.2
       prop-types: 15.8.1
       react: 19.0.0-rc-f994737d14-20240522