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Changelog

This file documents all notable changes to the GCHP wrapper repository starting in version 14.0.0. See also CHANGELOG files for individual submodules, such as:

  • src/GCHP_GridComp/GEOSChem_GridComp/geos-chem/CHANGELOG.md
  • src/GCHP_GridComp/GEOSChem_GridComp/HEMCO/CHANGELOG.md
  • src/GCHP_GridComp/GEOSChem_GridComp/Cloud-J/CHANGELOG.md
  • src/GCHP_GridComp/GEOSChem_GridComp/HETP/CHANGELOG.md
  • src/MAPL/CHANGELOG.md

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[14.5.0] - 2024-11-08

Added

  • Added documentation about GEOS convection change affecting meteorology starting June 1, 2020

Changed

  • Updated GEOS-Chem to 14.5.0
  • Updated HEMCO to 3.10.0
  • Updated Cloud-J to 8.0.1

Fixed

  • Fixed formatting error in .github/workflows/stale.yml that caused the Mark Stale Issues action not to run
  • Updated compiler requirements to specify max GNU version is 12
  • Updated documentation for version 14.5.0
  • Updated docs/requirements.txt to use jinja2==3.1.4 (fixes a security issue)

[14.4.3] - 2024-08-13

Changed

  • Updated GEOS-Chem (science codebase) to 14.4.3
  • Updated HEMCO to 3.9.3
  • Updated Cloud-J to 7.7.3

Fixed

  • Added brackets around exempt-issue-labels list in .github/workflows/stale.yml

[14.4.2] - 2024-07-24

Changed

  • Updated Cloud-J submodule to 7.7.2
  • Disable support for FAST-JX for all simulations except Hg

[14.4.1] - 2024-06-28

Fixed

  • Fixed formatting error in .github/workflows/stale.yml that caused the Mark Stale Issues action not to run

[14.4.0] - 2024-05-30

Added

  • RTD docs now includes Supplemental Guide "Archiving Output with the History diagnostics"
  • GitHub Action config file .github/workflows/stale.yml, which replaces StaleBot
  • Added git submodule HETP for aerosol thermodynamics in GEOS-Chem

Changed

  • Updated Python package versions for ReadTheDocs in docs/requirements.txt
  • Now request Python 3.12 for ReadTheDocs builds in .readthedocs.yaml
  • Updated GEOS-Chem submodule to 14.4.0
  • Updated HEMCO submodule to 3.9.0
  • Changed subdirectory name HEMCO_GridComp to HEMCO since not its own gridded component
  • Moved HEMCO and Cloud-J submodules from GCHP_GridComp to GCHP_GridComp/GEOSChem_GridComp where they are used
  • Converted Github issue templates to issue forms using YAML definition files

Removed

  • GitHub config files .github/stale.yml and .github/no-response.yml

[14.3.1] - 2024-04-02

Added

  • Now print container name being read by ExtData when CAP.EXTDATA is set to DEBUG in logging.yml
  • Added new pre-processer setting GCHP_WRAPPER for use in submodules
  • Added PLEadv export to FV3 submodule for inclusion in GCHP HISTORY.rc files
  • Added git submodule for HETP aerosol thermodynamics

Changed

  • Updated GEOS-Chem submodule to 14.3.1
  • Updated HEMCO submodule to 3.8.1
  • Now use short names for submodules (i.e. without the path) in .gitmodules

Fixed

  • Fixed bug where SPHU used to construct PLE for advection was vertically inverted if using raw GMAO meteorology files
  • Fixed bug in UpwardsMassFlux diagnostic that was causing all values to be zero

[14.3.0] - 2024-02-07

Added

  • Added capability for TOMAS simulations in GCHP
  • Added Cloud-J as submodule within GCHP_GridComp directory
  • Added compile option FASTJX to use legacy Fast-JX to compute J-values in GEOS-Chem instead of Cloud-J (required for mercury simulation)

Changed

  • Updated GEOS-Chem submodule to 14.3.0
  • Updated HEMCO submodule to 3.8.0

Fixed

  • Avoid semicolon in CMAKE_ Fortran_FLAGS variable when additional flags are passed to cmake
  • Updated debugging guide with clearer examples

[14.2.3] - 2023-12-01

Added

  • Script .release/changeVersionNumbers.sh to change version numbers before a new GCHP release

[14.2.2] - 2023-10-23

Changed

  • Updated GEOS-Chem submodule to 14.2.2

[14.2.1] - 2023-10-10

Changed

  • test now points to src/GCHP_GridComp/GEOSChem_GridComp/geos-chem/test
  • Hard-coded ESMF logging option removed from GCHPctm.F90
  • Updated version numbers and documentation

[14.2.0] - 2023-10-05

Added

  • Added run-time option to use dry air pressure in advection
  • Added run-time option to correct mass flux for humidity
  • Added .readthedocs.yaml to configure ReadTheDocs builds

Changed

  • Updated GEOS-Chem submodule to 14.2.0
  • Updated HEMCO submodule to 3.7.0
  • Updated version numbers in CMakeLists.txt and docs/source/conf.py to 14.2.0
  • Changed default air pressure in advection from total to dry
  • Updated AUTHORS.txt for GCHP 14.2.0
  • Updated README.md so that links point to http://geos-chem.org
  • Updated logo & badge links in README.md
  • Updated version number to 14.2.0

Fixed

  • Fixed post-advection pressure edges (PLE1) passed to advection to be derived from the correct surface pressure
  • Fixed typo in docs/source/conf.py, "_static" should be "_static/"

[14.1.1] - 2023-03-03

Added

  • Added EXE_FILE_NAME and INSTALLCOPY to src/CMakeLists.txt (facilitates integration testing)

Changed

  • Changed "carboncycle" to "carbon" in src/GCHP_GridComp/GEOSChem_GridComp/CMakeLists.txt
  • Simplified Github issue and pull request templates
  • Updated ReadTheDocs to specify 8.1 is minimum version of ESMF
  • Updated version numbers in CMakeLists.txt and docs/source/conf.py to 14.1.1

Fixed

  • Fixed global attributes written to stretched grid checkpoint files to enable restart
  • Fixed day-of-week scale factor handling in MAPL ExtData
  • Fixed stretched grid checkpoint file issue in MAPL that prevented restarting stretched grid simulations

[14.1.0] - 2023-02-01

Changed

  • Updated GEOS-Chem submodule to 14.1.0
  • Updated HEMCO submodule to 3.6.0
  • Updated MAPL submodule from v2.18.3 -> v2.26.0
  • Updated gFTL-shared submodule from v1.4.1 -> v1.5.0
  • Updated yaFyaml submodule from v1.0-beta.4 -> v1.0.4
  • Updated pFlogger submodule from v1.6.1 -> v1.9.1
  • Updated ReadTheDocs documentation for 14.1.0

Fixed

  • Fixed logic in .github/workflows/findRefKey.sh for determining previous commit

[14.0.2] - 2022-11-29

Changed

  • Updated GEOS-Chem submodule to 14.0.2
  • Updated HEMCO submodule to 3.5.2
  • Updated the documentation for clarity

Fixed

  • Removed memory leaks in GEOS-Chem and HEMCO submodule code
  • Units for State_Diag%RxnRate diagnostic are now molec cm-3 s-1 instead of s-1

[14.0.1] - 2022-10-31

Changed

  • Updated GEOS-Chem submodule to 14.0.1

[14.0.0] - 2022-10-25

Added

  • Created CHANGELOG.md

Changed

  • Changed GEOS-Chem submodule to 14.0.0 release
  • Changed HEMCO submodule version: 3.4.0 -> 3.5.0
  • Changed GEOS-ESM submodule versions:
    • MAPL: v2.6.3 -> v2.18.3
    • FVdycoreCubed_GridComp: v1.2.12 -> v1.8.0
    • fvdycore: geos/v1.1.6 -> geos/v1.4.0
    • GMAO_Shared: v1.3.8 -> v1.5.3
    • FMS: geos/2019.01.02+noaff.6 -> geos/2019.01.02+noaff.8
    • ESMA_cmake: v3.0.6 -> v3.8.0
  • Changed Goddard-Fortran-Ecosystem submodule versions:
    • gFTL-shared: v1.2.0 -> v1.4.1
    • gFTL: v1.3.1 -> v1.6.0
    • pFlogger: v1.5.0 -> v1.6.1
    • yaFyaml: v0.5.0 -> v1.0-beta.4
  • Updated build files for compatibility with new submodule versions
  • Updated CONTRIBUTING.md and SUPPORT.md to retire guidelines on GEOS-Chem wiki
  • Updated GCHP ReadTheDocs documentation
  • Updated spack deployment action to use new installation procedure
  • Update AWS benchmarking github actions to act on all dev* branches

Removed

  • Removed Azure continuous integration test pipeline
  • Removed pFUnit submodule since not used

Fixed

  • Fixed broken CMAKE_BUILD_TYPE options for intel and gfortran compilers