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I have managed to generate the json and nii files from the DICOM data. I have used MRIcroGL to make the conversion However, in order to use SEPIA, I need to rename the files accordingly to the BIDS format. I am using this script (https://github.com/kschan0214/QSM_Consensus_Paper_Example_Code/blob/main/From_DICOM_zip_file_to_SEPIA_ready/Preparation_03_rename_to_bids_format.m) to perform the action. I have added the mandatory input accordingly to the location of my files and "Run" it but I did not see any changes. Could someone please advice ? Thank you :) |
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Issue was resolve as I did not follow the folders structure as follows : https://github.com/kschan0214/QSM_Consensus_Paper_Example_Code/blob/main/docs/Figures/data_prep_step3.png?raw=true |
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Issue was resolve as I did not follow the folders structure as follows : https://github.com/kschan0214/QSM_Consensus_Paper_Example_Code/blob/main/docs/Figures/data_prep_step3.png?raw=true