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3dunet segmentation fault #1878

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mahmoodn opened this issue Oct 10, 2024 · 0 comments
Open

3dunet segmentation fault #1878

mahmoodn opened this issue Oct 10, 2024 · 0 comments

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@mahmoodn
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When I want to run the 3dunet workload, it ends up with a segmentation fault which is quite not clear what is the exact problem. See the output below:

$ python run.py --backend=pytorch --scenario=Offline --model=./build/model/3dunet_kits19_pytorch.ptc
Constructing SUT...
Finished constructing SUT.
Constructing QSL...
Found 43 preprocessed files
Using performance count = 43
Finished constructing QSL.
Loading PyTorch model...
Running Loadgen test...
Loading file case_00400
Loading file case_00125
Loading file case_00128
Loading file case_00189
Loading file case_00005
Loading file case_00111
Loading file case_00006
Loading file case_00052
Loading file case_00161
Loading file case_00012
Loading file case_00171
Loading file case_00070
Loading file case_00207
Loading file case_00034
Loading file case_00187
Loading file case_00000
Loading file case_00169
Loading file case_00185
Loading file case_00049
Loading file case_00160
Loading file case_00112
Loading file case_00003
Loading file case_00162
Loading file case_00203
Loading file case_00157
Loading file case_00138
Loading file case_00078
Loading file case_00065
Loading file case_00086
Loading file case_00041
Loading file case_00206
Loading file case_00084
Loading file case_00024
Loading file case_00066
Loading file case_00061
Loading file case_00056
Loading file case_00076
Loading file case_00087
Loading file case_00044
Loading file case_00176
Loading file case_00092
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Loading file case_00080
Traceback (most recent call last):
  File "/scratch/mahmood/inference/vision/medical_imaging/3d-unet-kits19/run.py", line 180, in <module>
    main()
  File "/scratch/mahmood/inference/vision/medical_imaging/3d-unet-kits19/run.py", line 161, in main
    lg.StartTestWithLogSettings(sut.sut, sut.qsl.qsl, settings, log_settings, args.audit_conf)
  File "/scratch/mahmood/inference/vision/medical_imaging/3d-unet-kits19/base_SUT.py", line 173, in issue_queries
Segmentation fault (core dumped)

Prior to that, i ran make setup and make preprocess_data.
I don't know if it is related to missing file or parameter or a runtime problem like memory limit. Any idea about that?

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