From 13434c9b2654b2eb81cccf5d6e65877f155baa38 Mon Sep 17 00:00:00 2001 From: Rose Crocker Date: Mon, 28 Oct 2024 13:24:07 +1000 Subject: [PATCH] Include DataEnveleopmentAnalysis.jl in ADRIA Manifest --- Manifest-v1.11.toml | 164 +++++++++++++++++++++++++++++++++++--------- 1 file changed, 130 insertions(+), 34 deletions(-) diff --git a/Manifest-v1.11.toml b/Manifest-v1.11.toml index c46938fd2..36101ba76 100644 --- a/Manifest-v1.11.toml +++ b/Manifest-v1.11.toml @@ -1,8 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.11.1" +julia_version = "1.11.0" manifest_format = "2.0" -project_hash = "f5f80681e1f41a61ae2064c46066ad6e608da783" +project_hash = "6ea7e541a27709a6f9e32ca4b0816717a46eb307" [[deps.ARFFFiles]] deps = ["CategoricalArrays", "Dates", "Parsers", "Tables"] @@ -10,6 +10,12 @@ git-tree-sha1 = "678eb18590a8bc6674363da4d5faa4ac09c40a18" uuid = "da404889-ca92-49ff-9e8b-0aa6b4d38dc8" version = "1.5.0" +[[deps.ASL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6252039f98492252f9e47c312c8ffda0e3b9e78d" +uuid = "ae81ac8f-d209-56e5-92de-9978fef736f9" +version = "0.1.3+0" + [[deps.AWS]] deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MbedTLS", "Mocking", "OrderedCollections", "Random", "SHA", "Sockets", "URIs", "UUIDs", "XMLDict"] git-tree-sha1 = "319ade7f8fc88243369e119859a7d3a3e7e7f267" @@ -71,9 +77,9 @@ version = "0.1.38" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" +git-tree-sha1 = "d80af0733c99ea80575f612813fa6aa71022d33a" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.0.4" +version = "4.1.0" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -207,6 +213,12 @@ git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" +[[deps.BenchmarkTools]] +deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" +version = "1.5.0" + [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" @@ -310,6 +322,12 @@ git-tree-sha1 = "9ebb045901e9bbf58767a9f34ff89831ed711aae" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.15.7" +[[deps.CodecBzip2]] +deps = ["Bzip2_jll", "TranscodingStreams"] +git-tree-sha1 = "e7c529cc31bb85b97631b922fa2e6baf246f5905" +uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd" +version = "0.8.4" + [[deps.CodecInflate64]] deps = ["TranscodingStreams"] git-tree-sha1 = "d981a6e8656b1e363a2731716f46851a2257deb7" @@ -445,6 +463,12 @@ git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" +[[deps.DataEnvelopmentAnalysis]] +deps = ["Distributed", "Distributions", "GLPK", "InvertedIndices", "Ipopt", "JuMP", "LinearAlgebra", "PrecompileTools", "Printf", "ProgressMeter", "Random", "SharedArrays", "SparseArrays", "Statistics", "StatsAPI", "StatsBase"] +git-tree-sha1 = "d79c7c880808ca66f24b65d8e064b8eca43c183a" +uuid = "a100299e-89d6-11e9-0fa0-2daf497e6a05" +version = "0.9.1" + [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" @@ -512,15 +536,15 @@ version = "0.1.10" [[deps.DiskArrays]] deps = ["LRUCache", "OffsetArrays"] -git-tree-sha1 = "dea23e3d787c25fbf5f879c4501da828bc729472" +git-tree-sha1 = "e0e89a60637a62d13aa2107f0acd169b9b9b77e7" uuid = "3c3547ce-8d99-4f5e-a174-61eb10b00ae3" -version = "0.4.5" +version = "0.4.6" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0" +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.11" +version = "0.10.12" weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] @@ -742,6 +766,18 @@ git-tree-sha1 = "273bd1cd30768a2fddfa3fd63bbc746ed7249e5f" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" version = "1.9.0" +[[deps.GLPK]] +deps = ["GLPK_jll", "MathOptInterface"] +git-tree-sha1 = "1d706bd23e5d2d407bfd369499ee6f96afb0c3ad" +uuid = "60bf3e95-4087-53dc-ae20-288a0d20c6a6" +version = "1.2.1" + +[[deps.GLPK_jll]] +deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "fe68622f32828aa92275895fdb324a85894a5b1b" +uuid = "e8aa6df9-e6ca-548a-97ff-1f85fc5b8b98" +version = "5.0.1+0" + [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" @@ -1007,6 +1043,18 @@ git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" version = "1.3.0" +[[deps.Ipopt]] +deps = ["Ipopt_jll", "LinearAlgebra", "MathOptInterface", "OpenBLAS32_jll", "PrecompileTools"] +git-tree-sha1 = "76315a7100e9e901d959c25b6ab6d4a37e799132" +uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9" +version = "1.6.7" + +[[deps.Ipopt_jll]] +deps = ["ASL_jll", "Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MUMPS_seq_jll", "SPRAL_jll", "libblastrampoline_jll"] +git-tree-sha1 = "a0950d209a055b3adb6d29ade5cbdf005a6bd290" +uuid = "9cc047cb-c261-5740-88fc-0cf96f7bdcc7" +version = "300.1400.1600+0" + [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -1064,6 +1112,16 @@ git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "3.0.4+0" +[[deps.JuMP]] +deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] +git-tree-sha1 = "c91f872c6150cf1471f9cb279f5e0dc09423bdcf" +uuid = "4076af6c-e467-56ae-b986-b466b2749572" +version = "1.23.3" +weakdeps = ["DimensionalData"] + + [deps.JuMP.extensions] + JuMPDimensionalDataExt = "DimensionalData" + [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" @@ -1083,9 +1141,9 @@ version = "1.19.3+0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8" +git-tree-sha1 = "e73a077abc7fe798fe940deabe30ef6c66bdde52" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.28" +version = "0.9.29" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" @@ -1104,10 +1162,10 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "4.0.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.1.2" +version = "9.1.3" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1206,9 +1264,9 @@ version = "1.11.0" [[deps.Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" +git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.11+0" +version = "1.11.0+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] @@ -1218,15 +1276,15 @@ version = "1.6.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" +git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.49.0+0" +version = "1.50.0+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175" +git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+0" +version = "1.17.0+1" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1285,9 +1343,9 @@ version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" +git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.3" +version = "1.1.0" [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1301,6 +1359,12 @@ git-tree-sha1 = "1d2dd9b186742b0f317f2530ddcbf00eebb18e96" uuid = "23992714-dd62-5051-b70f-ba57cb901cac" version = "0.10.7" +[[deps.METIS_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "1fd0a97409e418b78c53fac671cf4622efdf0f21" +uuid = "d00139f3-1899-568f-a2f0-47f597d42d70" +version = "5.1.2+0" + [[deps.MLFlowClient]] deps = ["Dates", "FilePathsBase", "HTTP", "JSON", "ShowCases", "URIs", "UUIDs"] git-tree-sha1 = "9abb12b62debc27261c008daa13627255bf79967" @@ -1400,6 +1464,12 @@ git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" version = "5.5.1+0" +[[deps.MUMPS_seq_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"] +git-tree-sha1 = "85047ac569761e3387717480a38a61d2a67df45c" +uuid = "d7ed1dd3-d0ae-5e8e-bfb4-87a502085b8d" +version = "500.700.300+0" + [[deps.MacroTools]] deps = ["Markdown", "Random"] git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" @@ -1422,6 +1492,12 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" +[[deps.MathOptInterface]] +deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"] +git-tree-sha1 = "c7fff4fbc415a6833988efbda7621039af2a5f36" +uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" +version = "1.32.0" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1483,6 +1559,12 @@ version = "0.3.4" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.12.12" +[[deps.MutableArithmetics]] +deps = ["LinearAlgebra", "SparseArrays", "Test"] +git-tree-sha1 = "90077f1e79de8c9c7c8a90644494411111f4e07b" +uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +version = "1.5.2" + [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" @@ -1583,6 +1665,12 @@ git-tree-sha1 = "a5a5a68d079ce531b0220e99789e0c1c8c5ed215" uuid = "925886fa-5bf2-5e8e-b522-a9147a512338" version = "1.7.1" +[[deps.OpenBLAS32_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "dd806c813429ff09878ea3eeb317818f3ca02871" +uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" +version = "0.3.28+3" + [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1646,13 +1734,11 @@ deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" uuid = "429524aa-4258-5aef-a3af-852621145aeb" version = "1.9.4" +weakdeps = ["MathOptInterface"] [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" @@ -1777,6 +1863,10 @@ deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" +[[deps.Profile]] +uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" + [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" @@ -1929,6 +2019,12 @@ git-tree-sha1 = "7cf3e4a9432defe1eaa9959c1c82e85485817d07" uuid = "cdeec39e-fb35-4959-aadb-a1dd5dede958" version = "2.0.1" +[[deps.SPRAL_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"] +git-tree-sha1 = "11f3da4b25efacd1cec8e263421f2a9003a5e8e0" +uuid = "319450e9-13b8-58e8-aa9f-8fd1420848ab" +version = "2024.5.8+0" + [[deps.SQLite_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] git-tree-sha1 = "004fffbe2711abdc7263a980bbb1af9620781dd9" @@ -1954,9 +2050,9 @@ version = "1.2.1" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" +git-tree-sha1 = "305becf8af67eae1dbc912ee9097f00aeeabb8d5" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.5" +version = "1.4.6" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2075,9 +2171,9 @@ version = "0.1.1" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "eeafab08ae20c62c44c8399ccb9354a04b80db50" +git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.7" +version = "1.9.8" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2331,9 +2427,9 @@ version = "1.6.1" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" +git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.3+0" +version = "2.13.4+0" [[deps.XMLDict]] deps = ["EzXML", "IterTools", "OrderedCollections"] @@ -2349,9 +2445,9 @@ version = "1.1.41+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" +git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.6+0" +version = "5.6.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -2421,9 +2517,9 @@ version = "0.7.3" [[deps.YAXArrays]] deps = ["CFTime", "DataStructures", "Dates", "DimensionalData", "DiskArrayTools", "DiskArrays", "Distributed", "DocStringExtensions", "Glob", "Interpolations", "IntervalSets", "IterTools", "Markdown", "OffsetArrays", "OnlineStats", "Optim", "OrderedCollections", "ParallelUtilities", "ProgressMeter", "Reexport", "Requires", "Statistics", "StatsBase", "Tables", "WeightedOnlineStats", "YAXArrayBase"] -git-tree-sha1 = "09cd01df4817c4d5f6eda845c4d75cc2855cf0b3" +git-tree-sha1 = "02d9149f67b26256ffa1e1c3915d474fae57099e" uuid = "c21b50f5-aa40-41ea-b809-c0f5e47bfa5c" -version = "0.5.11" +version = "0.5.12" [[deps.Zarr]] deps = ["AWSS3", "Blosc", "CodecZlib", "DataStructures", "Dates", "DiskArrays", "HTTP", "JSON", "LRUCache", "OffsetArrays", "OpenSSL", "Pkg", "URIs", "ZipArchives"]