v0.4.3

What's Changed

• Improved model performance
• Support for multi-objective analysis
• Adjust rankings to match site reordering due to distance sorting by @Rosejoycrocker in #224
• Add depth column to MCDA decision matrix to be used in seeding and shading decision matrices by @Rosejoycrocker in #225
• Remove additional weighting that is no longer needed by @ConnectedSystems in #227
• Re-order site data by unique site id column to align logged site ids by @ConnectedSystems in #228
• CompatHelper: bump compat for GLMakie to 0.8, (keep existing compat) by @github-actions in #233
• v0.4.3 merge by @ConnectedSystems in #241
• Various package dependency version bumps via CompatHelper

Full Changelog: v0.4.2...v0.4.3

v0.4.2

What's Changed

• Mix normalisation bug in MCDA by @Rosejoycrocker in #162
• Miscellaneous changes to clean up code by @ConnectedSystems in #161
• Scenario relative cover metric to return cluster wide values by @ConnectedSystems in #164
• Fixes to ODE formulation and indexing by @Rosejoycrocker in #165
• CompatHelper: add new compat entry for Distributions at version 0.25, (keep existing compat) by @github-actions in #166
• Changes to top_N_sites rank metric by @ConnectedSystems in #167
• Support runs across multiple RCPs by @ConnectedSystems in #163
• Support extraction of geometry data from inconsistent column names by @ConnectedSystems in #169
• Robustness metrics by @ConnectedSystems in #172
• Replace bleaching resistance with uncertain bleaching sensitivity by @ConnectedSystems in #174
• Incorporation of zoning criteria in MCDA by @Rosejoycrocker in #175
• Add sampling methods by @ConnectedSystems in #176
• Add dhw summary statistics to ResultSet by @Rosejoycrocker in #181
• Spread site selection by @ConnectedSystems in #180
• Corrections to assignment of growth rates and tests for coral_spec() parameters by @Rosejoycrocker in #183
• Coral model adjustments by @ConnectedSystems in #184
• Switch to netCDF by @ConnectedSystems in #185
• Correct connectivity alignment by @ConnectedSystems in #186
• Changes to support Multi-Objective Optimization by @ConnectedSystems in #188
• Bug fix for ODE + change to definition of basal area by @Rosejoycrocker in #190
• Update example domain with netCDF format datacubes by @ConnectedSystems in #187
• Tentative support for Multi-Objective Robust Optimization by @ConnectedSystems in #189
• Reorganize data loading functions by @ConnectedSystems in #193
• Adjust coral wave mortalities following recommendation by Ken by @Rosejoycrocker in #195
• Consolidate site area calcs #170 by @ConnectedSystems in #191
• Performance changes by @ConnectedSystems in #192
• Connectivity update by @ConnectedSystems in #197
• Adding within size class growth for size class 6 back in for ODE and adjusting within size class growth rates by @Rosejoycrocker in #196
• Update metrics by @ConnectedSystems in #199
• Updated background mortality values by @ConnectedSystems in #201
• Minor changes to get visualizations working for v0.4.2 by @ConnectedSystems in #202
• Add distance sorting to MCDA by @Rosejoycrocker in #198
• v0.4.2 dev merge by @ConnectedSystems in #203

Full Changelog: v0.4.1...v0.4.2

v0.4.1

What's Changed

• Adding function to generate csv summary result set by @Rosejoycrocker in #125
• Fixes typos which were not picked up in previous PR by @Rosejoycrocker in #126
• Include PowerBI post processing file in module by @ConnectedSystems in #131
• Fixes for recruitment issue by @ConnectedSystems in #137
• Fix site ranking log by @ConnectedSystems in #140
• Correct simplified settler cover calculation by @ConnectedSystems in #141
• Fixes undefined absolute_site_coral_cover by @Rosejoycrocker in #142
• Remove tf from simulation constants by @ConnectedSystems in #143
• Fixes missed tf definition by @Rosejoycrocker in #144
• Distributes seeded corals at selected sites according to space available by @Rosejoycrocker in #145
• Add timeframe datapackage property by @ConnectedSystems in #147
• Adds function to distribute seeded corals at selected sites according to space available (addresses #146) by @Rosejoycrocker in #148
• Update bleaching mortality model by @ConnectedSystems in #149
• Applying depth offset to align with IPMF by @ConnectedSystems in #154
• Additional metrics for site rank analysis by @ConnectedSystems in #153
• Add copy of model spec to ResultSet by @ConnectedSystems in #155
• Add incoming and outgoing connectivity ranks and criteria by @ConnectedSystems in #156
• Adds function to find top n sites in result set for each scenario by @Rosejoycrocker in #159
• Adding coral cover area criteria in terms of absolute coral cover by @Rosejoycrocker in #160

Full Changelog: v0.4...v0.4.1

v0.4

What's Changed

• More appropriate indication of cluster-wide outcomes by @ConnectedSystems in #97
• Expand docstring for proportional_adjustment() for clarity by @ConnectedSystems in #107
• Ensure proportional adjustment of coral cover remain in bounds by @ConnectedSystems in #106
• Address TODO: Extract non-coral parameters to reduce memory use by @ConnectedSystems in #105
• Unguided selection by @ConnectedSystems in #112
• Sysimage builder by @ConnectedSystems in #115
• Fix log scaling error in MCDA coral cover criteria by @Rosejoycrocker in #117
• Detailed docstrings added + shading matrix function added by @Rosejoycrocker in #118
• Address small Shelter Volume outcomes (#91) by @ConnectedSystems in #108
• Fixes small issue introduced by compartmentalising SE and SH matrix creation by @Rosejoycrocker in #122

Full Changelog: v0.3.2...v0.4

v0.3.2 dev release

What's Changed

• Adding new total_cover function to RCI calculation by @Rosejoycrocker in #80
• Changes to support site level metrics by @ConnectedSystems in #84
• Changes to scaling for MCDA criteria (site capacity) (address #79) by @Rosejoycrocker in #85
• Relative cover input to RCI be relative to the sites max coral cover? by @ConnectedSystems in #89
• Scenario focused metrics by @ConnectedSystems in #93

New Contributors

• @Rosejoycrocker made their first contribution in #80

Full Changelog: v0.2.1...v0.3.2

v0.2.1

Includes minor bug fixes to address:

• Error when handling missing sites in site data and connectivity
• Mismatched return types from summarized relative cover metric
• Default value for deployed_coral_risk_tol out of bounds
• Include upper/lower bounds when filtering sites based on depth.

v0.2

First stable development release

What's Changed

• CompatHelper: add new compat entry for GeoDataFrames at version 0.2, (keep existing compat) by @github-actions in #20
• CompatHelper: add new compat entry for GraphPlot at version 0.5, (keep existing compat) by @github-actions in #19
• CompatHelper: add new compat entry for OrdinaryDiffEq at version 6, (keep existing compat) by @github-actions in #18
• CompatHelper: add new compat entry for CSV at version 0.10, (keep existing compat) by @github-actions in #2
• CompatHelper: add new compat entry for WinRPM at version 1, (keep existing compat) by @github-actions in #14
• CompatHelper: add new compat entry for Plots at version 1, (keep existing compat) by @github-actions in #16
• CompatHelper: add new compat entry for ModelParameters at version 0.3, (keep existing compat) by @github-actions in #12
• CompatHelper: add new compat entry for StaticArrays at version 1, (keep existing compat) by @github-actions in #11
• CompatHelper: add new compat entry for BenchmarkTools at version 1, (keep existing compat) by @github-actions in #15
• CompatHelper: add new compat entry for Graphs at version 1, (keep existing compat) by @github-actions in #10
• CompatHelper: add new compat entry for DifferentialEquations at version 7, (keep existing compat) by @github-actions in #17
• CompatHelper: add new compat entry for Setfield at version 0.8, (keep existing compat) by @github-actions in #13
• CompatHelper: add new compat entry for ModelingToolkit at version 8, (keep existing compat) by @github-actions in #3
• CompatHelper: add new compat entry for DataFrames at version 1, (keep existing compat) by @github-actions in #9
• CompatHelper: add new compat entry for IJulia at version 1, (keep existing compat) by @github-actions in #6
• CompatHelper: add new compat entry for ProfileView at version 1, (keep existing compat) by @github-actions in #8
• CompatHelper: add new compat entry for Compose at version 0.9, (keep existing compat) by @github-actions in #4
• CompatHelper: add new compat entry for BlackBoxOptim at version 0.6, (keep existing compat) by @github-actions in #5
• CompatHelper: add new compat entry for MATLAB at version 0.8, (keep existing compat) by @github-actions in #7
• CompatHelper: add new compat entry for ProgressMeter at version 1, (keep existing compat) by @github-actions in #67
• CompatHelper: bump compat for Setfield to 1, (keep existing compat) by @github-actions in #72
• CompatHelper: add new compat entry for GR at version 0.64, (keep existing compat) by @github-actions in #73
• CompatHelper: add new compat entry for CpuId at version 0.3, (keep existing compat) by @github-actions in #74
• Site population cap by @ConnectedSystems in #76

New Contributors

• @github-actions made their first contribution in #20
• @ConnectedSystems made their first contribution in #76

Full Changelog: https://github.com/open-AIMS/ADRIA.jl/commits/v0.2