RabadanLab

All

33 repositories

arcasHLA
Public
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Python
•
GNU General Public License v3.0
•50•121•36•5•Updated Aug 20, 2024Aug 20, 2024
Pandora
Public
Microbial Signatures in Human RNAseq Data
Python
•
MIT License
•1•0•0•1•Updated Apr 22, 2024Apr 22, 2024
pitp
Public
HTML
•0•0•0•0•Updated Jan 23, 2024Jan 23, 2024
Smoother
Public
A Unified and Modular Framework to Incorporate Structural Dependency in Spatial Omics Data
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•2•0•0•0•Updated Nov 9, 2023Nov 9, 2023
ViromeOfManhattan
Public
Python
•
MIT License
•1•0•0•0•Updated Nov 8, 2023Nov 8, 2023
proscope
Public
Jupyter Notebook
•1•0•0•0•Updated Sep 22, 2023Sep 22, 2023
randomly
Public
A Library for Denoising Single-Cell Data with Random Matrix Theory
sparsity dropout data-analysis single-cell denoising single-cell-rna-seq random-matrix-theory single-cell-analysis single-cell-omics
Jupyter Notebook
•
MIT License
•10•36•2•0•Updated Aug 16, 2023Aug 16, 2023
INDEL-seq
Public
Scripts used for INDEL-seq data processing
Python
•0•0•0•0•Updated Jun 4, 2023Jun 4, 2023
randomlypage
Public
Webpage for randomly package
HTML
•1•0•0•0•Updated May 15, 2023May 15, 2023
spatial_dipg
Public
R
•1•0•1•0•Updated Apr 21, 2023Apr 21, 2023
Chek2_scRNAseq
Public
The script used in manuscript "Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade" for scRNAseq data analysis.
Jupyter Notebook
•0•1•0•0•Updated Feb 8, 2023Feb 8, 2023
ES
Public
Python
•2•0•0•0•Updated Jan 18, 2023Jan 18, 2023
randomlysite
Public
HTML
•0•0•0•0•Updated Dec 5, 2022Dec 5, 2022
RabadanLab.github.io
Public
HTML
•0•0•0•0•Updated Nov 9, 2022Nov 9, 2022
GBMsinglecell
Public
Python
•0•0•0•0•Updated Aug 1, 2021Aug 1, 2021
PH_recombination_virus
Public
Pipeline to infer recombination rates
R
•0•1•0•0•Updated Mar 24, 2021Mar 24, 2021
Bootstrap-Analysis-Arriaga-Nature-Cancer-2020
Public
Script of bootstrap analysis of evolution tree used in Juan M Arriaga, et al. A MYC and RAS co-activation signature in localized prostate cancer drives bone metastasis and castration resistance. Nature Cancer (2020)
R
•0•2•0•0•Updated Aug 13, 2020Aug 13, 2020
TOBI
Public
TOBI predicts somatic variants from .vcf or .bam input
R
•
MIT License
•4•7•4•0•Updated May 29, 2019May 29, 2019
mutcomfocal
Public
R
•
MIT License
•0•0•0•0•Updated May 29, 2019May 29, 2019
dockersavi
Public
Dockerfolder for Docker-ized version of SAVI
Dockerfile
•1•0•0•0•Updated Feb 11, 2019Feb 11, 2019
pamler
Public
Shell
•1•1•0•0•Updated Sep 10, 2018Sep 10, 2018
randomlyView
Public
HTML
•0•0•0•0•Updated Jun 20, 2018Jun 20, 2018
mage-pipeline
Public
MAGE - Multilevel Analysis of Gene Expression
R
•
MIT License
•0•1•0•0•Updated Jan 6, 2018Jan 6, 2018
scTDA
Public
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Python
•
GNU General Public License v3.0
•21•7•0•0•Updated Aug 10, 2017Aug 10, 2017
MITKats
Public
The Medical Imaging Interaction Toolkit with augmented tools for segmentation (MITKats), an extension of MITK with Threshold Components and Clipping Segmentation features.
C++
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Other
•1•1•0•0•Updated May 18, 2017May 18, 2017
NORI
Public
NORI (Non-coding RNA Identification), a computational tool to identify lncRNAs using next generation sequencing.
1•0•0•0•Updated Mar 15, 2017Mar 15, 2017
sakmapper
Public
Implementation of Mapper Algorithm
Python
•
MIT License
•10•1•0•0•Updated Nov 18, 2016Nov 18, 2016
EvoMod
Public
Evolutionary Moduli space visualization and statistics
Python
•
GNU General Public License v3.0
•1•0•0•0•Updated Oct 27, 2016Oct 27, 2016
TARGet
Public
Topological inference of horizontal evolution from multiple sequence alignments
C++
•
GNU General Public License v3.0
•5•0•0•0•Updated Apr 22, 2016Apr 22, 2016
Pegasus
Public
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq
Java
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MIT License
•9•11•3•0•Updated Feb 20, 2016Feb 20, 2016