Repositories list

• tools-iuc

  Public
  Fork of Tool Shed repositories maintained by the Intergalactic Utilities Commission

  HTML

  •

  MIT License

  •436•0•0•1•Updated Nov 7, 2024Nov 7, 2024

• ifremer-bioinformatics.github.io

  Public
  public web site of SeBiMER on Github

  bioinformaticsbioinformatics-toolbioinformatics-visualization

  JavaScript

  •2•0•0•1•Updated Jan 11, 2024Jan 11, 2024

• samba

  Public archive
  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

  pipelineednametabarcoding+ 516srrna18sworkflownextflow

  Nextflow

  •

  MIT License

  •5•12•4•0•Updated Jun 28, 2023Jun 28, 2023

• BeeDeeM-Tools

  Public archive
  Sequence management tools relying on the Bioinformatics Databank Manager System, BeeDeeM (miror).

  bioinformaticsbioinformatics-databasessequence-analysis

  Java

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

• ToolDirectory

  Public
  Dynamic visualization of softwares managed by a Bioinformatics Core Facility

  data-visualizationedambioinformatics

  Python

  •

  Apache License 2.0

  •1•4•0•0•Updated Apr 6, 2023Apr 6, 2023

• Katalog

  Public
  The Katalog library aims at displaying list of softwares (or databanks) using facetted data visualization system

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

• orson

  Public archive
  Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.

  workflowannotationproteome+ 2transcriptomenextflow-pipelines

  Nextflow

  •

  MIT License

  •3•5•0•0•Updated Mar 3, 2023Mar 3, 2023

• omics-catalog

  Public
  A FAIR toolkit for fast visualization of omics data and metadata

  JavaScript

  •0•4•0•0•Updated Feb 15, 2023Feb 15, 2023

• pallor

  Public
  Nextflow

  •

  GNU Affero General Public License v3.0

  •1•2•0•0•Updated Jun 13, 2022Jun 13, 2022

• FLORA

  Public
  workFLOw for Rnaseq analyses of the Amocyst project

  Nextflow

  •

  MIT License

  •1•1•0•0•Updated Mar 18, 2022Mar 18, 2022

• celia

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•2•0•0•Updated Jul 26, 2021Jul 26, 2021

• Keshif

  Public
  Keshif - Data Made Explorable (Prototype)

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •123•0•0•0•Updated Apr 17, 2020Apr 17, 2020

• BLAST-PLAST-bench

  Public
  Scripts to run benchmarks of BLAST and PLAST on a supercomputer

  blast-searchesblastnplast+ 6blastxblastpmegablastsupercomputerprotein-sequencesgene-sequences

  Shell

  •0•0•0•0•Updated Jan 30, 2018Jan 30, 2018