natverse

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32 repositories

coconatfly
Public
Comparative Connectomics of Public and In Progress Drosophila Datasets
r neuroscience connectomics neuroanatomy-toolbox
R
•1•6•6•3•Updated Nov 15, 2024Nov 15, 2024
fafbseg
Public
Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain
r neuroscience connectomics neuroanatomy-toolbox
R
•
GNU General Public License v3.0
•4•6•16•2•Updated Nov 10, 2024Nov 10, 2024
nat
Public
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
cran r visualisation neuroscience image-analysis neuron connectomics 3d neuroanatomy neuroanatomy-toolbox
R
•29•64•50•9•Updated Oct 15, 2024Oct 15, 2024
malevnc
Public
Support for working with Janelia FlyEM Male VNC dataset
R
•
GNU General Public License v3.0
•0•1•5•1•Updated Oct 11, 2024Oct 11, 2024
neuprintr
Public
R client utilities for interacting with the neuPrint connectome analysis service
r neuroscience connectomics neuroanatomy-toolbox
R
•3•3•11•2•Updated Oct 6, 2024Oct 6, 2024
nat.nblast
Public
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
morphological-analysis neuroanatomy neurons neuroanatomy-toolbox nblast
R
•6•17•13•4•Updated Aug 31, 2024Aug 31, 2024
vfbconnectr
Public
An R Interface to vfb-connect to query virtualflybrain.org
r neuroscience drosophila natverse
R
•
GNU General Public License v3.0
•2•0•1•0•Updated Aug 31, 2024Aug 31, 2024
nat.utils
Public
R package providing utility functions in support of NeuroAnatomy Toolbox (nat)
cran nat neuroanatomy-toolbox
R
•
GNU General Public License v3.0
•1•0•0•0•Updated Aug 27, 2024Aug 27, 2024
natmanager
Public
Streamlined installation of natverse packages
R
•0•2•0•0•Updated Aug 27, 2024Aug 27, 2024
hemibrainr
Public
Code for working with data from Janelia FlyEM's hemibrain project
R
•4•7•17•1•Updated Aug 9, 2024Aug 9, 2024
coconat
Public
Core Connectomics Utilities for the Natverse
R
•
GNU General Public License v3.0
•0•0•2•0•Updated Jul 25, 2024Jul 25, 2024
neuronbridger
Public
R client utilities for interacting with the neuronbridge matching service
ImageJ Macro
•3•0•1•1•Updated Jun 6, 2024Jun 6, 2024
colorRamps
Public
R
•0•0•0•0•Updated Mar 6, 2024Mar 6, 2024
nat.h5reg
Public
Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format
r neuroscience neuroanatomy-toolbox
R
•
Other
•0•1•1•0•Updated Nov 18, 2023Nov 18, 2023
elmr
Public
Support for working with light and electron microscopy fly brain data
r neuroanatomy neuroanatomy-toolbox
R
•
GNU General Public License v3.0
•3•7•4•0•Updated Aug 31, 2023Aug 31, 2023
nat.templatebrains
Public
Support for 3D template brains used as targets for image registration
r image-registration neuroanatomy neuroanatomy-toolbox bridging-registrations natverse
R
•
GNU General Public License v3.0
•0•3•6•0•Updated Aug 17, 2023Aug 17, 2023
nat.jrcbrains
Public
Janelia Research Campus Bridging Registrations for Drosophila Brains
neuroanatomy-toolbox registration janelia bridging-registrations drosophila-brains
R
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Other
•0•0•3•0•Updated Jun 7, 2023Jun 7, 2023
neuromorphr
Public
R client utilities for interacting with the neuromorpho.org repository
R
•1•1•0•0•Updated Apr 19, 2023Apr 19, 2023
insectbrainr
Public
R client utilities for interacting with the InsectBrainDB.org
R
•0•0•0•0•Updated Apr 17, 2023Apr 17, 2023
dracor
Public
Decode Draco Format 3D Mesh data
r r-package 3d-mesh natverse
C++
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Other
•1•0•0•0•Updated Feb 1, 2023Feb 1, 2023
flycircuit
Public
R package flycircuit
drosophila neuroanatomy neuroanatomy-toolbox natverse r
R
•
GNU General Public License v3.0
•2•4•3•0•Updated Jan 18, 2023Jan 18, 2023
nat.flybrains
Public
Support for Drosophila bridging/mirroring registrations in R
drosophila neuroanatomy neuroanatomy-toolbox bridging-registrations natverse r template-brains
Haxe
•
GNU General Public License v3.0
•3•2•9•0•Updated Aug 16, 2022Aug 16, 2022
rcatmaid
Public
R package providing API access to the CATMAID web image annotation tool
r connectomics neuroanatomy catmaid neuroanatomy-toolbox
R
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GNU General Public License v3.0
•6•9•21•5•Updated Aug 14, 2022Aug 14, 2022
natcpp
Public
Fast C++ functions for computational neuroanatomy
computational-neuroscience neuroanatomy-toolbox r
C++
•
GNU General Public License v3.0
•1•0•0•0•Updated Jan 5, 2022Jan 5, 2022
natverse
Public
Umbrella package to help install/load nat packages
R
•
GNU General Public License v3.0
•0•10•5•0•Updated Jul 28, 2021Jul 28, 2021
nat.devtools
Public
Tools to help develop natverse packages
r-package devtools usethis natverse
R
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GNU General Public License v3.0
•0•0•0•0•Updated Jul 6, 2021Jul 6, 2021
drvid
Public
Access to DVID API
r neuroscience connectomics neuroanatomy neuroanatomy-toolbox
R
•
GNU General Public License v3.0
•2•0•0•0•Updated Apr 23, 2021Apr 23, 2021
natverse.github.io
Public
Static repo for github pages
HTML
•0•0•0•0•Updated Jan 28, 2021Jan 28, 2021
natverse_hugo
Public
CSS
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Creative Commons Attribution Share Alike 4.0 International
•2•0•4•0•Updated Jan 28, 2021Jan 28, 2021
nat.examples
Public
Example code for the NeuroAnatomy Toolbox (nat) R package
HTML
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MIT License
•4•8•5•0•Updated Nov 9, 2020Nov 9, 2020