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    15 repositories

    • tileseq_mutcount

      Public
      Re-implement TileSeq mutation counts in python
      Python
      •
      MIT License
      •3•0•1•0•Updated Sep 9, 2024Sep 9, 2024

    • tileseqMave

      Public
      The RothLab TileSeq analysis pipeline for MAVE
      R
      •
      GNU General Public License v3.0
      •6•4•14•0•Updated Apr 1, 2024Apr 1, 2024

    • pacybara

      Public
      A pacbio barcode clustering and barseq pipeline
      pacbiodmsmavebarseqbioinformatics
      R
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Mar 27, 2024Mar 27, 2024

    • clusterUtil

      Public
      utility scripts for HPC cluster usage
      Shell
      •0•2•0•0•Updated Mar 1, 2024Mar 1, 2024

    • pacbioTools

      Public
      Shell
      •0•0•0•0•Updated Jul 10, 2023Jul 10, 2023

    • docs

      Public
      0•0•0•0•Updated Jun 5, 2023Jun 5, 2023

    • proteomeLLR

      Public
      LLR calculation for various variant effect predictors, proteome-wide
      Python
      •0•0•0•0•Updated May 1, 2023May 1, 2023

    • mavequest-front-end

      Public
      The frontend service of MaveQuest, a web resource to explore potential assays, phenotypes and clinical interests for human gene variants.
      Vue
      •0•1•0•0•Updated Apr 28, 2023Apr 28, 2023

    • maveregistry-front-end

      Public
      MaveRegistry is a collaborative resource to catalyze collaboration, reduce redundant efforts, allow stakeholders to nominate targets, and enable tracking and sharing of progress on ongoing MAVE projects.
      Vue
      •0•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • variant-effect-predictor-assessment

      Public
      R
      •1•1•0•0•Updated Sep 15, 2022Sep 15, 2022

    • burden-test-public

      Public
      R
      •0•1•0•0•Updated Sep 15, 2022Sep 15, 2022

    • chromozoom

      Public
      ChromoZoom is a fast, fluid web-based genome browser
      JavaScript
      •
      GNU Affero General Public License v3.0
      •5•47•5•0•Updated Mar 15, 2021Mar 15, 2021

    • mave-gene-prioritization

      Public
      R script to 1) Extract missense variants that had been observed in "clinical testing" (as opposed to "literature only") in ClinVar. 2) Calculating movability and reappearance parameters using the aggregated and capped Invitae variant counts. 3) Apply the movability and reappearance parameters to ClinVar genes, calculating their movability- and r…
      dmsclinvarvariant-filtration
      R
      •0•4•0•0•Updated Oct 22, 2020Oct 22, 2020

    • tileseq_package

      Public
      DMS Tileseq sequence analysis pipeline
      Perl
      •0•1•1•0•Updated Apr 17, 2020Apr 17, 2020

    • pph2_and_rank

      Public
      Ranks genes according to PolyPhen2 scores for a list of mutations
      Python
      •
      MIT License
      •1•1•0•0•Updated Dec 10, 2011Dec 10, 2011