settings.xml

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!DOCTYPE properties SYSTEM "http://java.sun.com/dtd/properties.dtd">
<properties>
<comment/>
<!--Directory of input ontologies (in .owl format)-->
<entry key="input_directory">/home/sascha/Desktop/onts</entry>
<!--Evaluation settings-->
<!--Do we want to save the evaluation statistics-->
<entry key="evaluate">true</entry>
<!--Path to statistic file-->
<entry key="evaluation_output_file">/home/sascha/Desktop/onts_statistics.xml</entry>
<!--Use multiple evaluation runs-->
<entry key="eval_runs">false</entry>
<!--Number of evaluation runs to average with-->
<entry key="number_of_runs">5</entry>
<!--Repeat the evaluation till the layer that is removed by OLH reachs this value-->
<entry key="max_olh_layer">8</entry>

<!--Graph output settings-->
<!--Output folder for graphs-->
<entry key="graph_output_path">/home/sascha/Desktop/graphs/</entry>
<!--Type of the output graph: 0 = Partition structure raph; 1 = Constaint graph-->
<entry key="output_graph_type">0</entry>
<!--Show axioms in the vertices-->
<entry key="show_axioms">true</entry>
<!--Number of axioms to show-->
<entry key="axiom_count">3</entry>
<!--Number of individuals to show on vertices-->
<entry key="number_of_indiv_labels">3</entry>
<!--Number of property labels to show on edges-->
<entry key="number_of_property_labels_edge">34</entry>
<!--Number of class labels to show on vertices (toplevel, i.e. highest classes in hierachy)-->
<entry key="number_of_class_labels_toplevel">13</entry>
<!--Number of class labels to show on vertices (sublevel, i.e. subclasses per group with the same super class)-->
<entry key="number_of_class_labels_sublevel">4</entry>
<!--Number of property labels to show on vertices (toplevel, i.e. highest classes in hierachy)-->
<entry key="number_of_property_labels_vertex_toplevel">33</entry>
<!--Number of property labels to show on vertices (sublevel, i.e. subclasses per group with the same super class)-->
<entry key="number_of_property_labels_vertex_sublevel">3</entry>

<!--Ontology output settings-->
<!--Path for output ontologies-->
<entry key="ontology_output_path">/home/sascha/Desktop/out/</entry>
<!--Export partitions as ontologies?-->
<entry key="export_ontologies">true</entry>

<!--Settings for the core algorithm-->
<!--Use rdf labels to build the labels-->
<entry key="use_rdf_label">true</entry>
<!--Language of the rdf labels-->
<entry key="rdf_label_lang">en</entry>
<!--Designator for the property0 vertexes in the constraint graph-->
<entry key="property_0_designator">[0]</entry>
<!--Designator for the property0 vertexes in the constraint graph-->
<entry key="property_1_designator">[1]</entry>
<!--Heuristic: Allow ontologies with max. a given number of axioms coitaining universal roles. These axioms are removed-->
<entry key="handle_universal_roles">true</entry>
<entry key="universal_role_treshhold">3</entry>
<!--Ignore check for safety-->
<entry key="ignore_safety_check">false</entry>
<!--Print removed axioms to standard output-->
<entry key="print_removed_axioms">true</entry>

<!--Settings for heuristics-->
<!--Settings for ignore properties  (IPH)-->
<!--Use IPH-->
<entry key="use_iph">true</entry>
<!--List of global properties to ignore-->
<entry key="global_properties">[Before (attribute), After (attribute), Due to (attribute), Associated with (attribute), Temporally related to (attribute), Characterizes (attribute), During (attribute), Causative agent (attribute)]</entry>
<!--List of domain global properties to ignore-->
<entry key="domain_global_properties">[Role group (attribute)]</entry>
<!--List of range global properties to ignore-->
<entry key="range_global_properties">[Component (attribute), Process output (attribute), Inheres in (attribute), Has focus (attribute), Specimen source identity (attribute), Precondition (attribute)]</entry>

<!--Settings for Ontology Level Reducer Heuristic (OLH)-->
<!--Use OLH-->
<entry key="use_olh">false</entry>
<!--Number of layers to remove-->
<entry key="olh_layers_to_remove">1</entry>

<!--Settings for OLH on biggest component-->
<!--Use OLH on biggest component-->
<entry key="use_olh_after">false</entry>
<!--Number of repetitions of this step-->
<entry key="olh_after_repetitions">1</entry>
<!--Portion of the biggest component on the whole ontology to be choosen-->
<entry key="olh_after_treshhold">0.9</entry>

<!--Settings for Biconnectivity Heuristic (BH)-->
<!--Use Biconnectivity Heuristic (BH)-->
<entry key="use_bh">false</entry>
<!--Max number of axiom labels for edges that are removed-->
<entry key="bh_number_of_axiom_labels">1</entry>
<!--Number of repetitions of the BH heuristic-->
<entry key="bh_number_of_repetitions_of_heuristic">1</entry>

<!--Settings for Community Detection Heuristic (CD)-->
<!--Use Community Detection Heuristic (CD)-->
<entry key="use_cd">false</entry>
<!--Flag stating if the louvain or leiden algorithm should be used. true = leiden, false = louvain-->
<entry key="cd_leiden">true</entry>
<!--Weight of non axiom edges in the network-->
<entry key="cd_weight_for_non_axiom_edges">3</entry>
<!--Resolution start-valaue and decrease for leiden or louvain algorithm-->
<entry key="cd_resolution_at_start">1.0</entry>
<entry key="cd_resolution_decrease">0.75</entry>

<!--Settings for Upper level remover heuristic (ULH)-->
<!--Use ULH-->
<entry key="use_ulh">false</entry>
<!--Path to upper level file (collection of upper level ontologies)-->
<entry key="upper_level_file">/home/sascha/workspace/java_ws/partitioner/res/upperlevels/upperlevels.json</entry>
<!--Treshhold for how many percent of the upper level ontology the given ontology can contain, before it's removed-->
<entry key="ulh_removal_treshhold">0.9</entry>
</properties>