bcl2fastq by Illumina

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

a shiny frontend for the nextflow-bcl pipeline

Demultiplexing pipeline for sequencing data

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

An awesome BCL demultiplexing and FastQ quality-control pipeline

for split fastq from mix bcl or fastq data by barcode/index

Workflow for Illumina's bcl2fastq

Nextflow pipeline for Illumina NGS demultiplexing

Demultiplexing pipeline for sequencing data