Demultiplexing pipeline for sequencing data

A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

Nextflow pipeline for Illumina NGS demultiplexing

Demultiplexing pipeline for sequencing data

for split fastq from mix bcl or fastq data by barcode/index

Workflow for Illumina's bcl2fastq

RNA-seq workflow for UALBANY CFG - Demux, QC, Vis, Align, preProcess, DGE Calls

a shiny frontend for the nextflow-bcl pipeline

An awesome BCL demultiplexing and FastQ quality-control pipeline

bcl2fastq by Illumina