Analysis of codon usage in oncogene families.

Calculate CUB indices and optimize the gene sequence to enhance expression

Shiny Web app for automatic codon optimization based on codon usage in Strongyloides species, Pristionchus species, Brugia malayi, as well as user-provided custom codon lookup tables

Comparative analysis pipeline of Population's Codon Usage

Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.

The following files and programs were used to investigate simulated (in silico) codon bias from pseudo-randomly generated sequences versus PCC7120 DNA condon bias. Several large differences were observed between the codon frequencies of the simulated and actual PCC1720 DNA.

It is simple codon optimiser by using codon bias and usage

MATLAB package for codon usage bias and NGS analysis

A python project for analysis of codon usage for gene or genome analysis

Python3 implementation of commonly used codon usage statistics

CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

Python package of codon usage bias analysis tools

Toolkit to analyze codon usage bias

Research on position-dependent hydrogen bonds per codon

Simple Python program to perform codon optimization or heterology calculations.