A lightweight rewrite of run_dbcan for better multithread performance

Cython bindings and Python interface to HMMER3.

A Pure-Python parser of HMMER3 output

Simple R utilities for working with HMMER

Bioinformatics analysis code

HMMER-based microcin search using full microcin sequences and double-glycine signal region.

Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice

A workflow for identifying novel viruses in Virtool

A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

A package to annotate protein sequences

Find NLR hmms in protein sequences.

This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.

Query sequence database by HMMs arranged in predefined synteny structure

MFannot is a program for the annotation of mitochondrial and plastid genomes

🔬 ♌ Bacterial ribosomal RNA predictor

Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).

Django website project for common sequence search tools.

Annotate DNA sequences for Gene Ontology terms

An ML-based predictor of GPCR/G-protein couplings using only sequence information