An image analysis pipeline for quantifying the spatial distribution of cell markers in stroma-rich tumors

TCNN: A Transformer Convolutional Neural Network for artifact classification in whole slide images

An implementation of deep learning segmentation models in digital pathology field

Scripts used for the "Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms" paper.

Detection of Graft Rejection Following Lung Transplantation

Platform for identifying metaphase spreads in a population of cells from whole slide images using Computer Vision techniques

Displays list of virtual microscope slides that can be displayed by the Viewer

Pathology Atlas (English version of Patoloji Atlası)

Classification of whole-slide images based on tumor infiltrating lymphocyte grades using image-level labels

CLI tool to run specimen-level inference on whole slide images

A pyqt5 GUI for CBIR in whole-slide images with Openslide

Implementation of HistoTransfer published in IEEE-BHI 2021.

Viewer for multifocal-plane virtual microscope

Python-based pipeline for tiles generation and pre-processing from digitized histopathological images.

Supplementary information associated with Besson et al. (2019) ECDP 2019

Whole Slide Image Segmentation

A fully automated approach for separating foreground (tissue) and background in bright-field microscopic whole-slide images of (immuno)histologically stained samples.

Implementation of state of the art algorithms for uneven illomination correction in whole slide imaging

A pyqt5 widget for viewing collection of whole-slide images with Openslide