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Parallel object reader, normalization bugfix gpu disable option and more

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@lacan lacan released this 16 May 11:23
· 12 commits to main since this release

Welcome to a new release with the following important changes

  • Adds useGPU( boolean ) to the builder to disable GPU (Enabled by default)
  • Fixes a bug found and corrected by @tfehlmann where ops were being re-created per image, which caused an error during image saving
  • Adds better error handling when no candidate files are present
  • Adds readResultsAsynchronously() to the builder, which allows the extension to read the resulting labeled images for each tile as cellpose processes them, potentially making the extension faster
  • Changes the logic for the VirtualEnvironmentRunner when using CONDA (Not available as such within the extension) as per a suggestion by @loicsauteur
  • Allows pixelSize() to accept values smaller than the original pixel size in case you want to upsample your data before sending it to cellpose
  • Uses a new log parser in order to parlse omnipose and cellpose v3 logs when training

What's Changed

  • Ensure that operations are the same when processing multiple images by @tfehlmann in #44
  • Bugfixes and update to Cellpose 3 logging by @lacan in #46

New Contributors

Full Changelog: v0.9.2...v0.9.3