Parallel object reader, normalization bugfix gpu disable option and more
Welcome to a new release with the following important changes
- Adds
useGPU( boolean )
to the builder to disable GPU (Enabled by default) - Fixes a bug found and corrected by @tfehlmann where
op
s were being re-created per image, which caused an error during image saving - Adds better error handling when no candidate files are present
- Adds
readResultsAsynchronously()
to the builder, which allows the extension to read the resulting labeled images for each tile as cellpose processes them, potentially making the extension faster - Changes the logic for the
VirtualEnvironmentRunner
when using CONDA (Not available as such within the extension) as per a suggestion by @loicsauteur - Allows
pixelSize()
to accept values smaller than the original pixel size in case you want to upsample your data before sending it to cellpose - Uses a new log parser in order to parlse omnipose and cellpose v3 logs when training
What's Changed
- Ensure that operations are the same when processing multiple images by @tfehlmann in #44
- Bugfixes and update to Cellpose 3 logging by @lacan in #46
New Contributors
- @tfehlmann made their first contribution in #44
Full Changelog: v0.9.2...v0.9.3