[refactor] brkraw api and update for future version #43
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| name: test | |
| on: | |
| # this workflow triggered on below condition [push, pull_request] | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ "*" ] | |
| # cancel previous similar workflow runs | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test_cli: | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| exclude: | |
| - python-version: "3.8" | |
| os: macos-latest | |
| - python-version: "3.9" | |
| os: macos-latest | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install . | |
| - name: Version and help | |
| run: | | |
| brkraw --version | |
| brkraw --help | |
| - name: "smoke end-to-end test: use CLI on tutorial data" | |
| run: make demo | |
| test_tutorial: | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| exclude: | |
| - python-version: "3.8" | |
| os: macos-latest | |
| - python-version: "3.9" | |
| os: macos-latest | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[dev] | |
| pip install .[SimpleITK] | |
| - name: Install tutorial | |
| run: make tests/tutorials | |
| - name: Test tutorial notebook | |
| run: | | |
| python -m pytest --nbmake tests/tutorials/JupyterNotebooks/01_GettingStarted.ipynb |