Update deps

CliMA · Nov 6, 2024 · df47844 · df47844
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Showing 4 changed files with 62 additions and 58 deletions.
diff --git a/experiments/ClimaCore/Manifest-v1.11.toml b/experiments/ClimaCore/Manifest-v1.11.toml
@@ -217,7 +217,7 @@ version = "0.3.18"
 
 [[deps.ClimaCoupler]]
 deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"]
-path = "../../.."
+path = "../.."
 uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
 version = "0.1.1"
 
@@ -436,9 +436,9 @@ version = "6.158.3"
 
 [[deps.DiffEqCallbacks]]
 deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d"
+git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "4.0.0"
+version = "4.1.0"
 
 [[deps.DiffResults]]
 deps = ["StaticArraysCore"]
@@ -454,9 +454,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
-git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856"
+git-tree-sha1 = "5e27b35fae15c8f955c07edf608baa21d091e366"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.6.18"
+version = "0.6.20"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -751,10 +751,10 @@ version = "0.17.2"
     MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 
 [[deps.HDF5_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
-git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
+git-tree-sha1 = "82a471768b513dc39e471540fdadc84ff80ff997"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.14.2+1"
+version = "1.14.3+3"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
@@ -817,9 +817,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2"
+git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.5.7"
+version = "0.4.53"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1211,10 +1211,10 @@ uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
 version = "1.0.2"
 
 [[deps.NetCDF_jll]]
-deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenMPI_jll", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
-git-tree-sha1 = "a8af1798e4eb9ff768ce7fdefc0e957097793f15"
+deps = ["Artifacts", "Blosc_jll", "Bzip2_jll", "HDF5_jll", "JLLWrappers", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "XML2_jll", "Zlib_jll", "Zstd_jll", "libzip_jll"]
+git-tree-sha1 = "4686378c4ae1d1948cfbe46c002a11a4265dcb07"
 uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
-version = "400.902.209+0"
+version = "400.902.211+1"
 
 [[deps.Nettle_jll]]
 deps = ["Artifacts", "GMP_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -1258,10 +1258,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112"
 version = "0.8.1+2"
 
 [[deps.OpenMPI_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"]
-git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
+git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762"
 uuid = "fe0851c0-eecd-5654-98d4-656369965a5c"
-version = "5.0.5+0"
+version = "4.1.6+0"
 
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
@@ -1544,9 +1544,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7"
+git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.58.0"
+version = "2.58.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1765,16 +1765,20 @@ version = "1.10.0"
 
 [[deps.TaylorSeries]]
 deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2"
+git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.17.3"
+version = "0.17.8"
 
     [deps.TaylorSeries.extensions]
     TaylorSeriesIAExt = "IntervalArithmetic"
+    TaylorSeriesJLD2Ext = "JLD2"
+    TaylorSeriesRATExt = "RecursiveArrayTools"
     TaylorSeriesSAExt = "StaticArrays"
 
     [deps.TaylorSeries.weakdeps]
     IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253"
+    JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+    RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
     StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 
 [[deps.TempestRemap_jll]]
@@ -1900,9 +1904,9 @@ version = "0.2.0"
 
 [[deps.VectorInterface]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb"
+git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9"
 uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8"
-version = "0.4.6"
+version = "0.4.8"
 
 [[deps.Vulkan_Loader_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]

diff --git a/experiments/ClimaCore/Manifest.toml b/experiments/ClimaCore/Manifest.toml
@@ -215,7 +215,7 @@ version = "0.3.18"
 
 [[deps.ClimaCoupler]]
 deps = ["Artifacts", "ClimaComms", "ClimaCore", "ClimaCoreTempestRemap", "Dates", "JLD2", "Logging", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"]
-path = "../../.."
+path = "../.."
 uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
 version = "0.1.1"
 
@@ -433,9 +433,9 @@ version = "6.158.3"
 
 [[deps.DiffEqCallbacks]]
 deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d"
+git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "4.0.0"
+version = "4.1.0"
 
 [[deps.DiffResults]]
 deps = ["StaticArraysCore"]
@@ -451,9 +451,9 @@ version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
-git-tree-sha1 = "95cf94719d2f71ad8b8c7ba3eb0accc978626856"
+git-tree-sha1 = "5e27b35fae15c8f955c07edf608baa21d091e366"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.6.18"
+version = "0.6.20"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -810,9 +810,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2"
+git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.5.7"
+version = "0.5.8"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1523,9 +1523,9 @@ version = "0.1.0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7"
+git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.58.0"
+version = "2.58.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1865,9 +1865,9 @@ version = "0.2.0"
 
 [[deps.VectorInterface]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb"
+git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9"
 uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8"
-version = "0.4.6"
+version = "0.4.8"
 
 [[deps.Vulkan_Loader_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]

diff --git a/experiments/ClimaEarth/Manifest-v1.11.toml b/experiments/ClimaEarth/Manifest-v1.11.toml
@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.0"
+julia_version = "1.11.1"
 manifest_format = "2.0"
 project_hash = "5649495ebeefc92d7b9428a7f4ac45942550b0ca"
 
@@ -665,9 +665,9 @@ version = "1.11.0"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0"
+git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.112"
+version = "0.25.113"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -950,9 +950,9 @@ version = "0.4.2"
 
 [[deps.GeoInterface]]
 deps = ["Extents", "GeoFormatTypes"]
-git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2"
+git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88"
 uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
-version = "1.3.7"
+version = "1.3.8"
 
 [[deps.GeoInterfaceMakie]]
 deps = ["GeoInterface", "GeometryBasics", "MakieCore"]
@@ -1245,9 +1245,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2"
+git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.5.7"
+version = "0.5.8"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1773,9 +1773,9 @@ version = "0.3.27+1"
 
 [[deps.OpenEXR]]
 deps = ["Colors", "FileIO", "OpenEXR_jll"]
-git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633"
+git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7"
 uuid = "52e1d378-f018-4a11-a4be-720524705ac7"
-version = "0.3.2"
+version = "0.3.3"
 
 [[deps.OpenEXR_jll]]
 deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -2215,9 +2215,9 @@ version = "3.45.3+0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7"
+git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.58.0"
+version = "2.58.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2670,9 +2670,9 @@ version = "0.2.0"
 
 [[deps.VectorInterface]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb"
+git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9"
 uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8"
-version = "0.4.6"
+version = "0.4.8"
 
 [[deps.Vulkan_Loader_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]

diff --git a/experiments/ClimaEarth/Manifest.toml b/experiments/ClimaEarth/Manifest.toml
@@ -660,9 +660,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0"
+git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.112"
+version = "0.25.113"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -943,9 +943,9 @@ version = "0.4.2"
 
 [[deps.GeoInterface]]
 deps = ["Extents", "GeoFormatTypes"]
-git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2"
+git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88"
 uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f"
-version = "1.3.7"
+version = "1.3.8"
 
 [[deps.GeoInterfaceMakie]]
 deps = ["GeoInterface", "GeometryBasics", "MakieCore"]
@@ -1237,9 +1237,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"]
-git-tree-sha1 = "783c1be5213a09609b23237a0c9e5dfd258ae6f2"
+git-tree-sha1 = "ce5737c0d4490b0e0040b5dc77fbb6a351ddf188"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.5.7"
+version = "0.5.8"
 
 [[deps.JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
@@ -1758,9 +1758,9 @@ version = "0.3.23+4"
 
 [[deps.OpenEXR]]
 deps = ["Colors", "FileIO", "OpenEXR_jll"]
-git-tree-sha1 = "327f53360fdb54df7ecd01e96ef1983536d1e633"
+git-tree-sha1 = "97db9e07fe2091882c765380ef58ec553074e9c7"
 uuid = "52e1d378-f018-4a11-a4be-720524705ac7"
-version = "0.3.2"
+version = "0.3.3"
 
 [[deps.OpenEXR_jll]]
 deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"]
@@ -2193,9 +2193,9 @@ version = "3.45.3+0"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "7a54136472ca0cb0f66ef22aa3f0ff198f379fa7"
+git-tree-sha1 = "f102316e5c958b425ef530ee51c7c8a1def55d1f"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.58.0"
+version = "2.58.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -2633,9 +2633,9 @@ version = "0.2.0"
 
 [[deps.VectorInterface]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "7aff7d62bffad9bba9928eb6ab55226b32a351eb"
+git-tree-sha1 = "7cab92153022a72d4534262cc15a96e21223e3f9"
 uuid = "409d34a3-91d5-4945-b6ec-7529ddf182d8"
-version = "0.4.6"
+version = "0.4.8"
 
 [[deps.Vulkan_Loader_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]