Merge pull request #218 from CliMA/ncc/update-oceananigans-more

Use Oceananigans v0.71.1

Manifest.toml

@@ -92,9 +92,9 @@ version = "0.3.9"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "7dd38532a1115a215de51775f9891f0f3e1bac6a"
+git-tree-sha1 = "c9a6160317d1abe9c44b3beb367fd448117679ca"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "1.12.1"
+version = "1.13.0"
 
 [[ChangesOfVariables]]
 deps = ["ChainRulesCore", "LinearAlgebra", "Test"]
@@ -201,9 +201,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "2e97190dfd4382499a4ac349e8d316491c9db341"
+git-tree-sha1 = "9d3c0c762d4666db9187f363a76b47f7346e673b"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.46"
+version = "0.25.49"
 
 [[DocStringExtensions]]
 deps = ["LibGit2"]
@@ -251,9 +251,9 @@ version = "1.13.0"
 
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
-git-tree-sha1 = "deed294cde3de20ae0b2e0355a6c4e1c6a5ceffc"
+git-tree-sha1 = "4c7d3757f3ecbcb9055870351078552b7d1dbd2d"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.12.8"
+version = "0.13.0"
 
 [[FixedPointNumbers]]
 deps = ["Statistics"]
@@ -292,9 +292,9 @@ version = "0.3.5"
 
 [[HDF5_jll]]
 deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "OpenSSL_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "fd83fa0bde42e01952757f01149dd968c06c4dba"
+git-tree-sha1 = "bab67c0d1c4662d2c4be8c6007751b0b6111de5c"
 uuid = "0234f1f7-429e-5d53-9886-15a909be8d59"
-version = "1.12.0+1"
+version = "1.12.1+0"
 
 [[HTTP]]
 deps = ["Base64", "Dates", "IniFile", "Logging", "MbedTLS", "NetworkOptions", "Sockets", "URIs"]
@@ -319,10 +319,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959"
 version = "1.0.0"
 
 [[IniFile]]
-deps = ["Test"]
-git-tree-sha1 = "098e4d2c533924c921f9f9847274f2ad89e018b8"
+git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625"
 uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f"
-version = "0.5.0"
+version = "0.5.1"
 
 [[IntelOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -357,10 +356,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
 version = "1.0.0"
 
 [[JLD2]]
-deps = ["DataStructures", "FileIO", "MacroTools", "Mmap", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "b528d68220e2aba1d2d0c0461b6f7eda8c5c1e33"
+deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"]
+git-tree-sha1 = "28b114b3279cdbac9a61c57b3e6548a572142b34"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.20"
+version = "0.4.21"
 
 [[JLLWrappers]]
 deps = ["Preferences"]
@@ -394,15 +393,15 @@ version = "0.8.1"
 
 [[LLVM]]
 deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"]
-git-tree-sha1 = "f8dcd7adfda0dddaf944e62476d823164cccc217"
+git-tree-sha1 = "761c362ede582d358026e22d08695231dd25242e"
 uuid = "929cbde3-209d-540e-8aea-75f648917ca0"
-version = "4.7.1"
+version = "4.8.0"
 
 [[LLVMExtra_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "62115afed394c016c2d3096c5b85c407b48be96b"
+git-tree-sha1 = "67cc5406b15bd04ff72a45f628bec61d36078908"
 uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab"
-version = "0.0.13+1"
+version = "0.0.13+3"
 
 [[LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
@@ -460,9 +459,9 @@ version = "0.19.2"
 
 [[MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "4b754a51cec47b0366056efcf6e19d95b2ecb54c"
+git-tree-sha1 = "8eed51eb836c8f47781cdb493ffd5f56370c0496"
 uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4"
-version = "4.0.0+0"
+version = "4.0.1+0"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
@@ -527,18 +526,20 @@ version = "1.0.0"
 
 [[NetCDF_jll]]
 deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Pkg", "Zlib_jll", "nghttp2_jll"]
-git-tree-sha1 = "0cf4d1bf2ef45156aed85c9ac5f8c7e697d9288c"
+git-tree-sha1 = "598f1a5e9829b3e57f233f98b34a22b376dff373"
 uuid = "7243133f-43d8-5620-bbf4-c2c921802cf3"
-version = "400.702.400+0"
+version = "400.702.402+0"
 
 [[NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
 [[Oceananigans]]
 deps = ["Adapt", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SafeTestsets", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"]
-git-tree-sha1 = "29af7741859142e62ee0724d16296aa5700aae84"
+git-tree-sha1 = "dc22cce4a0645420cca327e40c795a77f0876c92"
+repo-rev = "ncc/fix-bug-otpe"
+repo-url = "https://github.com/CliMA/Oceananigans.jl.git"
 uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09"
-version = "0.70.5"
+version = "0.71.4"
 
 [[OffsetArrays]]
 deps = ["Adapt"]
@@ -585,9 +586,9 @@ version = "1.4.1"
 
 [[PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "ee26b350276c51697c9c2d88a072b339f9f03d73"
+git-tree-sha1 = "7e2166042d1698b6072352c74cfd1fca2a968253"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.5"
+version = "0.11.6"
 
 [[Parsers]]
 deps = ["Dates"]
@@ -613,9 +614,9 @@ uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [[Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "2cf929d64681236a2e074ffafb8d568733d2e6af"
+git-tree-sha1 = "de893592a221142f3db370f48290e3a2ef39998f"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.2.3"
+version = "1.2.4"
 
 [[Printf]]
 deps = ["Unicode"]
@@ -745,9 +746,9 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SpecialFunctions]]
 deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
-git-tree-sha1 = "f0bccf98e16759818ffc5d97ac3ebf87eb950150"
+git-tree-sha1 = "cbf21db885f478e4bd73b286af6e67d1beeebe4c"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "1.8.1"
+version = "1.8.4"
 
 [[StatProfilerHTML]]
 deps = ["DataStructures", "Dates", "FlameGraphs", "HAML", "Profile", "SHA", "Test"]
@@ -763,9 +764,9 @@ version = "0.5.5"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "95c6a5d0e8c69555842fc4a927fc485040ccc31c"
+git-tree-sha1 = "6354dfaf95d398a1a70e0b28238321d5d17b2530"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.3.5"
+version = "1.4.0"
 
 [[StaticPermutations]]
 git-tree-sha1 = "193c3daa18ff3e55c1dae66acb6a762c4a3bdb0b"
@@ -802,9 +803,9 @@ version = "1.1.2"
 
 [[StructArrays]]
 deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"]
-git-tree-sha1 = "d21f2c564b21a202f4677c0fba5b5ee431058544"
+git-tree-sha1 = "57617b34fa34f91d536eb265df67c2d4519b8b98"
 uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
-version = "0.6.4"
+version = "0.6.5"
 
 [[StructTypes]]
 deps = ["Dates", "UUIDs"]
@@ -817,9 +818,9 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
 [[Suppressor]]
-git-tree-sha1 = "a819d77f31f83e5792a76081eee1ea6342ab8787"
+git-tree-sha1 = "c6ed566db2fe3931292865b966d6d140b7ef32a9"
 uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
-version = "0.2.0"
+version = "0.2.1"
 
 [[TOML]]
 deps = ["Dates"]

Project.toml

@@ -2,7 +2,7 @@ name = "OceanTurbulenceParameterEstimation"
 uuid = "eca81dc5-87a6-4430-aec8-c76695404a43"
 license = "MIT"
 authors = ["Adeline Hillier <adelineh2000@gmail.com>", "Gregory L. Wagner <wagner.greg@gmail.com>", "Navid C. Constantinou <navidcy@gmail.com>", "and co-contributors"]
-version = "0.10.0"
+version = "0.10.1"
 
 [deps]
 DataDeps = "124859b0-ceae-595e-8997-d05f6a7a8dfe"
@@ -28,7 +28,7 @@ Distributions = "0.25"
 EnsembleKalmanProcesses = "0.3"
 FileIO = "1"
 JLD2 = "0.4"
-Oceananigans = "^0.70.3"
+Oceananigans = "^0.71"
 OffsetArrays = "1"
 OrderedCollections = "1"
 ProgressBars = "1"