cg stands for Clinical Genomics; a clinical sequencing platform under SciLifeLab
In this context, cg provides the interface between these tools to facilitate automation and other necessary cross-talk. It also exposes some APIs:
- HTTP REST for powering the web portal: clinical.scilifelab.se
- CLI for interactions on the command line
Please check out our guide for contributing to cg
Cg written in Python 3.9+ and is available on the Python Package Index (PyPI).
pip install cgIf you would like to install the latest development version, use poetry.
git clone https://github.com/Clinical-Genomics/cg
cd cg
poetry install