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Search space api #140

Merged
merged 92 commits into from
Jul 11, 2024
Merged

Search space api #140

merged 92 commits into from
Jul 11, 2024

Commits on Mar 19, 2024

  1. new search space working with est

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Commits on Mar 20, 2024

  1. edits

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Commits on Mar 22, 2024

  1. edits

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Commits on Mar 27, 2024

  1. tutorials fixes

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    perib committed Mar 27, 2024
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  2. edits to tutorials

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    perib committed Mar 27, 2024
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  3. Merge branch 'EpistasisLab:main' into new_search_space_def

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    perib authored Mar 27, 2024
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  4. Merge remote-tracking branch 'origin/dev' into new_search_space_def

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    perib committed Mar 27, 2024
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  5. edit

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    perib committed Mar 27, 2024
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  6. rng_ to rng

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  7. Merge pull request #122 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Mar 27, 2024
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  8. graph and tree random length initial pipeline

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Commits on Mar 29, 2024

  1. flatten pipelines to graph, graphpipe params

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Commits on Apr 10, 2024

  1. flatten to graphpipeline, steadystate

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Commits on Apr 18, 2024

  1. lots of edits to configuration spaces

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  2. edits

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    perib committed Apr 18, 2024
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  3. edits

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    perib committed Apr 18, 2024
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  4. Merge pull request #123 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Apr 18, 2024
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  5. fixes, passing tests

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  6. Merge pull request #124 from perib/new_search_space_def 

    fixes, passing tests
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    perib authored Apr 18, 2024
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  7. more fixes with search spaces - wrapper, make sure all supported modu… 

    …les are included
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    perib committed Apr 18, 2024
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  8. Merge pull request #126 from perib/new_search_space_def 

    more fixes with search spaces - wrapper, make sure all supported modu…
    @perib
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Commits on Apr 19, 2024

  1. added unique_id, fixed issue where graphpipeline not correctly identi… 

    …fying classifiers/regressors
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  2. Merge pull request #127 from perib/new_search_space_def 

    added unique_id, fixed issue where graphpipeline not correctly identi…
    @perib
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  3. number of nodes on pipelines,gp, recursive + merge graphpipeline node… 

    …s, edit tests to remove some fits
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  4. added GaussianProcessClassifier, test for merge duplicate nodes,

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  5. Merge pull request #128 from perib/new_search_space_def 

    New search space def
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    perib authored Apr 19, 2024
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Commits on Apr 23, 2024

  1. cleanup

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    perib committed Apr 23, 2024
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  2. updated dask version dependency

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    perib committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. complexity objective for more classifiers, added regressors

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  2. bug fixes with configs and wrapper params

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    perib committed Apr 24, 2024
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  3. tpotclassifier and tpotregressor now use data size for search spaces

    @perib
    perib committed Apr 24, 2024
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  4. typo

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    perib committed Apr 24, 2024
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  5. typo

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    perib committed Apr 24, 2024
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  6. bump version

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    perib committed Apr 24, 2024
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  7. update version

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    perib committed Apr 24, 2024
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  8. Merge pull request #129 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored Apr 24, 2024
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  9. fix num_nodes test, add update checker, setup.py change

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    perib committed Apr 24, 2024
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  10. param_edits

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    perib committed Apr 24, 2024
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  11. edit space

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    perib committed Apr 24, 2024
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  12. optional inner classifiers/regressors

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    perib committed Apr 24, 2024
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  13. edit

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    perib committed Apr 24, 2024
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  14. edit version

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    perib committed Apr 24, 2024
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  15. Merge pull request #130 from perib/new_search_space_def 

    fix num_nodes test, add update checker, setup.py change
    @perib
    perib authored Apr 24, 2024
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Commits on Apr 25, 2024

  1. edit default space

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    perib committed Apr 25, 2024
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Commits on May 3, 2024

  1. bug fixes, fixed unique_id type (non-iterable tuples), fixed graphpip… 

    …eline mutation function
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    perib committed May 3, 2024
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Commits on May 4, 2024

  1. make more mutation/cx functions available for gp

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  2. fixed crossover between different node types causing a crash. now dif… 

    …ferent node types return false
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    perib committed May 4, 2024
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Commits on May 11, 2024

  1. unions, wrapping classifiers/regressors as transformers, multiple opt… 

    …ions in get_search_space now get flattened to have equal probability.
    @perib
    perib committed May 11, 2024
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Commits on May 15, 2024

  1. functions to convert tpot1 config dicts to tpot2

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  2. small note

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    perib committed May 15, 2024
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  3. Merge pull request #131 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 15, 2024
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  4. bug fix

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    perib committed May 15, 2024
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Commits on May 16, 2024

  1. search_space fixes

    @perib
    perib committed May 16, 2024
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  2. some bug fixes with configurations

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    perib committed May 16, 2024
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  3. Merge pull request #132 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 16, 2024
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  4. remove hardcoded wrappers that are no longer needed

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    perib committed May 16, 2024
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  5. Merge pull request #133 from perib/new_search_space_def 

    remove hardcoded wrappers that are no longer needed
    @perib
    perib authored May 16, 2024
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  6. passed rng to the sp generative functions, updated dynamic union to n… 

    …ot include duplicates
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    perib committed May 16, 2024
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  7. map elites section functions

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    perib committed May 16, 2024
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  8. import map elites selectors

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    perib committed May 16, 2024
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  9. config updates

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    perib committed May 16, 2024
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Commits on May 17, 2024

  1. Merge pull request #134 from perib/new_search_space_def 

    New search space def
    @perib
    perib authored May 17, 2024
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  2. gradientboosting invalid crossover parser fix

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    perib committed May 17, 2024
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  3. one hot encoder no longer throws error by default on unknown categories

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    perib committed May 17, 2024
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Commits on May 18, 2024

  1. addded kbins dsitrcretizer with passthrough

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  2. make sure genetic feature selection always selects at least one column

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    perib committed May 18, 2024
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  3. dyanmic_linear_fix

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Commits on May 20, 2024

  1. fix bugs

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Commits on May 23, 2024

  1. catch dask error when closing, validation strategy now puts errors in… 

    … the correct column and prevents a crash, base evolver can now terminate mid generation when max_time_seconds is reached,
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    perib committed May 23, 2024
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Commits on May 24, 2024

  1. Merge pull request #136 from perib/new_search_space_def 

    New search space def
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Commits on Jun 7, 2024

  1. removed a cx function in union pipeline so that we don't unintentiona… 

    …lly duplicate search spaces
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    perib committed Jun 7, 2024
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  2. added skip

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    perib committed Jun 7, 2024
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Commits on Jun 14, 2024

  1. imputer

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    perib committed Jun 14, 2024
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  2. added memory to sequential

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    perib committed Jun 14, 2024
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Commits on Jun 19, 2024

  1. Merge pull request #137 from perib/new_search_space_def 

    New search space def
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    perib authored Jun 19, 2024
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Commits on Jun 29, 2024

  1. estimator with default search spaces. linear new default

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  2. tutorials fixes

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    perib committed Jun 29, 2024
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  3. Merge pull request #138 from perib/new_search_space_def 

    New search space def
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    perib authored Jun 29, 2024
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Commits on Jul 9, 2024

  1. removed unused files, passed rng into default_rng

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  2. wrapper now crossover over hyperparametesr

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    perib committed Jul 9, 2024
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  3. made naming clearer

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    perib committed Jul 9, 2024
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  4. wrapper for crossover functions so that subclasses can use crossover … 

    …instead of _crossover
    @perib
    perib committed Jul 9, 2024
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  5. tpot estimator documentation edit

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    perib committed Jul 9, 2024
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  6. update documentation

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    perib committed Jul 9, 2024
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  7. fixed imputation tutorial

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    perib committed Jul 9, 2024
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  8. fix

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    perib committed Jul 9, 2024
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  9. wrap fix

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    perib committed Jul 9, 2024
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Commits on Jul 10, 2024

  1. added check for infinite max_eval_time_seconds

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  2. Print out package versions and make tests verbose

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    jay-m-dev committed Jul 10, 2024
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  3. Pin numpy version

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    jay-m-dev committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. Merge pull request #139 from perib/new_search_space_def 

    New search space def
    @jay-m-dev
    jay-m-dev authored Jul 11, 2024
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  2. Resolve version conflicts and test conflicts

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    jay-m-dev committed Jul 11, 2024
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