Remove dynamic runner

GazzolaLab · May 31, 2024 · fa6eccc · fa6eccc
1 parent 8a89d17
commit fa6eccc
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Showing 2 changed files with 2 additions and 7 deletions.
diff --git a/src/miv_simulator/interface/synapse_forest.py b/src/miv_simulator/interface/synapse_forest.py
@@ -51,11 +51,6 @@ def dispatch_code(
         self.__call__(cmds.append)
         lines = [" ".join(cmd) for cmd in cmds]
 
-        if isinstance(python, str):
-            runner, _, python = python.rpartition(" ")
-            if runner:
-                lines = [runner + " " + line for line in lines]
-
         cache_marker = self.local_directory("cached")
         lines.append(f'echo "finished" > {cache_marker}')
 

diff --git a/src/miv_simulator/simulator/generate_synapse_forest.py b/src/miv_simulator/simulator/generate_synapse_forest.py
@@ -46,7 +46,7 @@ def generate_synapse_forest(
         _bin_check("neurotrees_import")
         _run(
             [
-                "neurotrees_import",
+                "mpirun -n 1 neurotrees_import",
                 population,
                 tree_output_filepath,
                 morphology,
@@ -83,7 +83,7 @@ def generate_synapse_forest(
         _bin_check("neurotrees_copy")
         _run(
             [
-                "neurotrees_copy",
+                "mpirun -n 1 neurotrees_copy",
                 "--fill",
                 "--output",
                 output_filepath,