Skip to content
/ Mapping-and-spatial-code Public

Codes used for spatial analysis incorporating WORLDCLIM open source climate data variables

2 stars 1 fork Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

HeatherARobinson/Mapping-and-spatial-code

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

17 Commits
#Use bioclim tiff OR bil files downloaded from www.worldclim.org/bioclim and put in working directory (or access them directly online) library(raster) #Load necessary packages library(rgdal) #Stack a raster with environmental variables #N.B.Temperature values in Celsius are given multipled by 10 for BIOCLIM variables. bioclim<-stack(raster('bio1.bil'),raster('bio2.bil'),raster('bio3.bil'),raster('bio4.bil'),raster('bio5.bil'),raster('bio6.bil'),raster('bio7.bil'),raster('bio8.bil'),raster('bio9.bil'),raster('bio10.bil'),raster('bio11.bil'),raster('bio12.bil'),raster('bio13.bil'),raster('bio14.bil'),raster('bio15.bil'),raster('bio16.bil'),raster('bio17.bil'),raster('bio18.bil'),raster('bio19.bil')) #Check visually that variation seems correct. N.B.'warmer'colours are used for smaller values on default plot settings #BIO1 = Annual Mean Temperature #BIO2 = Mean Diurnal Range (Mean of monthly (max temp - min temp)) #BIO3 = Isothermality (BIO2
#Use bioclim tiff OR bil files downloaded from www.worldclim.org/bioclim and put in working directory (or access them directly online) library(raster) #Load necessary packages library(rgdal) #Stack a raster with environmental variables #N.B.Temperature values in Celsius are given multipled by 10 for BIOCLIM variables. bioclim<-stack(raster('bio1.bil'),raster('bio2.bil'),raster('bio3.bil'),raster('bio4.bil'),raster('bio5.bil'),raster('bio6.bil'),raster('bio7.bil'),raster('bio8.bil'),raster('bio9.bil'),raster('bio10.bil'),raster('bio11.bil'),raster('bio12.bil'),raster('bio13.bil'),raster('bio14.bil'),raster('bio15.bil'),raster('bio16.bil'),raster('bio17.bil'),raster('bio18.bil'),raster('bio19.bil')) #Check visually that variation seems correct. N.B.'warmer'colours are used for smaller values on default plot settings #BIO1 = Annual Mean Temperature #BIO2 = Mean Diurnal Range (Mean of monthly (max temp - min temp)) #BIO3 = Isothermality (BIO2
 
 
Climate data incorporation from BIL files.R
Climate data incorporation from BIL files.R
 
 
Elevation data integration
Elevation data integration
 
 
Figure One Code Site Map.R
Figure One Code Site Map.R
 
 
README.md
README.md
 
 

Repository files navigation

Mapping-and-spatial-code

This repository contains codes used to analyse data and produce maps included in "Geographic and temporal distributions of Saccharomyces cerevisiae and Saccharomyces paradoxus", Robinson, H.A, based on integration of publicly available climate data with user specified coordinates to enable modelling with climate data. Further codes have also been added for the integration of elevation and coastline data.

About

Codes used for spatial analysis incorporating WORLDCLIM open source climate data variables

Topics

climate spatial-analysis ecology-modelling worldclim bioclim

Resources

Readme
Activity

Stars

2 stars

Watchers

2 watching

Forks

1 fork
Report repository

Releases

No releases published

Packages

No packages published

Languages