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@Hekstra-Lab

Hekstra Lab

GitHub of the Hekstra Lab. Note: Careless and Reciprocal Spaceship have migrated to https://github.com/rs-station

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  1. phase-retrieval phase-retrieval Public

    A small library implementing phase retrieval algorithms for 2D images.

    Jupyter Notebook 23 9

  2. mdtools mdtools Public

    Tools for running MD simulations in OpenMM

    Python 6 2

  3. colav colav Public

    Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

    Jupyter Notebook 5 1

  4. scientific-python-bootcamp scientific-python-bootcamp Public

    Notebooks from a three day introduction to scientific computing in python at Harvard University.

    Jupyter Notebook 3 2

  5. SFcalculator SFcalculator Public

    3 1

  6. microutil microutil Public

    Python utils for working microscopy datasets

    Python 2 2

Repositories

Showing 10 of 44 repositories
  • raman-analysis Public

    Spontaneous Raman analysis library

    Hekstra-Lab/raman-analysis’s past year of commit activity
    Python 1 1 1 4 Updated Nov 5, 2024
  • dw-examples Public

    Examples of merging crystallographic intensities with a bivariate prior

    Hekstra-Lab/dw-examples’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Nov 1, 2024
  • SFcalculator_torch Public

    Differentiable pipeline connecting protein atomic models and crystallography structure factors

    Hekstra-Lab/SFcalculator_torch’s past year of commit activity
    Python 2 MIT 2 1 0 Updated Oct 29, 2024
  • integrator Public

    Proof of concept profile fitting and integration with neural nets

    Hekstra-Lab/integrator’s past year of commit activity
    Python 2 0 0 0 Updated Oct 22, 2024
  • colav Public

    Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

    Hekstra-Lab/colav’s past year of commit activity
    Jupyter Notebook 5 MIT 1 0 0 Updated Sep 11, 2024
  • dw Public

    jupyter notebooks exploring the double-Wilson model

    Hekstra-Lab/dw’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jul 26, 2024
  • room-of-requirement Public

    Useful Lab Utilities

    Hekstra-Lab/room-of-requirement’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Jul 25, 2024
  • yeast-mrcnn Public

    Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images

    Hekstra-Lab/yeast-mrcnn’s past year of commit activity
    Python 0 MIT 0 3 1 Updated Jul 2, 2024
  • microutil Public

    Python utils for working microscopy datasets

    Hekstra-Lab/microutil’s past year of commit activity
    Python 2 BSD-3-Clause 2 7 1 Updated Jul 2, 2024
  • fast-overlap Public

    meep meep

    Hekstra-Lab/fast-overlap’s past year of commit activity
    Python 0 2 2 1 Updated Jul 2, 2024

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