Skip to content
This repository has been archived by the owner on May 31, 2024. It is now read-only.

Commit

Permalink
added third party software
Browse files Browse the repository at this point in the history
  • Loading branch information
Josh Iszatt authored and Josh Iszatt committed May 18, 2023
1 parent 601fd99 commit 2ed75cf
Showing 1 changed file with 5 additions and 6 deletions.
11 changes: 5 additions & 6 deletions README.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -39,12 +39,11 @@ Run the help command to see options
## Third-party software
| Software | Version | Description | Please cite |
| -------- | -------- | -------- | -------- |
| SPAdes | 3.15.4 | -------- | -------- |
| bbmap | 38.18 | -------- | -------- |
| samtools | 1.6 | -------- | -------- |
| biopython | 1.78 | -------- | -------- |
| checkv | 1.0.1 | -------- | -------- |
| checkv-db | 1.5 | -------- | -------- |
| SPAdes | 3.15.4 | The St.Petersburg genome assembler containing various pipelines released under GPLv2 | https://doi.org/10.1002/cpbi.102 |
| bbmap | 38.18 | U.S Department of Energy (DOE) Joint Genome Institute (JGI) toolset containing a set of fast bioinformatic tools for DNA/RNA sequencing data | https://sourceforge.net/projects/bbmap/ |
| biopython | 1.78 | A set of tools written in python for biological computation | https://biopython.org/ |
| checkv | 1.0.1 | CheckV quality and completeness analysis for viral genomes | https://doi.org/10.1038/s41587-020-00774-7 |
| checkv-db | 1.5 | Database version in this container | https://doi.org/10.1038/s41587-020-00774-7 |
| fastqc | 0.11.9 | Quality control for reads | -------- |

## Docker tags
Expand Down

0 comments on commit 2ed75cf

Please sign in to comment.