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Fix nonstationary unit tests #502

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Fix nonstationary unit tests

Fix nonstationary unit tests #502

Workflow file for this run

.github/workflows/develop-test.yml at e0e9b47
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Develop test
on:
pull_request:
branches: [develop, feature/**]
jobs:
build-numpy:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10"]
test-group: [short, optimize, multivariate, optimize-experimental]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install numpy dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8
python -m pip install -e .[tests,hnswlib]
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
sh scripts/flake/fatal.sh
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
sh scripts/flake/issues.sh
- name: Short Tests
if: matrix.test-group == 'short'
run: |
python tests/data.py
python tests/neighbors.py
python tests/kernels.py
python tests/gp.py
python tests/batch.py
python tests/predict.py
python tests/precompute/fast_posterior_mean.py
python tests/scale_opt.py
python tests/experimental/shear.py
python tests/experimental/hierarchical.py
- name: Optimize Tests
if: matrix.test-group == 'optimize'
run: python tests/optimize.py
- name: Optimize Tests - experimental
if: matrix.test-group == 'optimize-experimental'
run: python tests/experimental/mini_batch.py
- name: Multivariate Tests
if: matrix.test-group == 'multivariate'
run: python tests/multivariate.py
build-jax:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install JAX dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -e .[tests,hnswlib,jax_cpu]
- name: Test JAX correctness
run: |
python tests/backend/jax_correctness.py
build-mpi:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install MPI dependencies
run: |
sudo apt-get install mpich
python -m pip install --upgrade pip
python -m pip install -e .[tests,hnswlib,mpi]
- name: Test MPI correctness
run: |
export MUYGPYS_BACKEND=mpi
mpirun -n 4 python tests/backend/mpi_correctness.py
build-torch:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Torch dependencies
run: |
python -m pip install --upgrade pip
python -m pip install -e .[tests,hnswlib,torch]
- name: Test Torch correctness
run: |
python tests/backend/torch_correctness.py
export MUYGPYS_BACKEND=torch
export MUYGPYS_FTYPE=32
python tests/torch/muygps_torch.py
build-docs:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get install pandoc
python -m pip install --upgrade pip
python -m pip install -e .[docs]
- name: Build docs
run: |
sphinx-build -b html docs docs/_build/html/