Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Interproscan #104

Merged
merged 13 commits into from
Jan 12, 2024
Merged

Interproscan #104

merged 13 commits into from
Jan 12, 2024

Commits on Jan 11, 2024

  1. replace local interproscan module with nf-core module

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    52ca25f View commit details
    Browse the repository at this point in the history

  2. replace local interproscan module with nf-core module

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    0a972be View commit details
    Browse the repository at this point in the history

  3. Update subworkflows/functional_annotation/main.nf 

    Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
    @MartinPippel @mahesh-panchal
    MartinPippel and mahesh-panchal authored Jan 11, 2024
    Configuration menu
    Copy the full SHA
    a9d24f1 View commit details
    Browse the repository at this point in the history

  4. Update subworkflows/functional_annotation/README.md 

    Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
    @MartinPippel @mahesh-panchal
    MartinPippel and mahesh-panchal authored Jan 11, 2024
    Configuration menu
    Copy the full SHA
    ca4d3bc View commit details
    Browse the repository at this point in the history

  5. remove unnecessary aguments -dp and -f as well as cpus

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    f2074ae View commit details
    Browse the repository at this point in the history

  6. remove unnecessary argument cpus

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    8ac0587 View commit details
    Browse the repository at this point in the history

  7. add cpu=8 by default, add -dra option for speed up (residue annotatio… 

    …n is only used for XML and JSON output)
    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    e0b631c View commit details
    Browse the repository at this point in the history

  8. get rid of predefined applications

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    fc17085 View commit details
    Browse the repository at this point in the history

  9. create patch for interproscan -appl argument

    @MartinPippel
    MartinPippel committed Jan 11, 2024
    Configuration menu
    Copy the full SHA
    a3ceb60 View commit details
    Browse the repository at this point in the history

Commits on Jan 12, 2024

  1. Revert "add cpu=8 by default, add -dra option for speed up (residue a… 

    …nnotation is only used for XML and JSON output)"

This reverts commit e0b631c.
    @MartinPippel
    MartinPippel committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    f8239af View commit details
    Browse the repository at this point in the history

  2. add default cpu = 2 to test config

    @MartinPippel
    MartinPippel committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    21f2267 View commit details
    Browse the repository at this point in the history

  3. revert back to use -appl option, because otherwise the pipeline crashes

    @MartinPippel
    MartinPippel committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    89a7330 View commit details
    Browse the repository at this point in the history

  4. remove obsolete interproscan path

    @MartinPippel
    MartinPippel committed Jan 12, 2024
    Configuration menu
    Copy the full SHA
    e368916 View commit details
    Browse the repository at this point in the history