isong update - tidying (09132023)

- PR #27: shiny app sources are moved to /tools - /tools is included in .Rbuildignore for package building - EPA data download rmarkdown was moved to /vignettes - Reference: https://r-pkgs.org/misc.html
NIEHS · Sep 13, 2023 · 254bbf4 · 254bbf4
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Showing 22 changed files with 7 additions and 2 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1 +1,2 @@
 ^\.github$
+tools/
diff --git a/R/.DS_Store b/R/.DS_Store
diff --git a/R/epa_download.Rmd → R/vignettes/epa_download.Rmd b/R/epa_download.Rmd → R/vignettes/epa_download.Rmd
@@ -1,6 +1,10 @@
 ---
-title: "EPA_data_download"
-output: html_document
+title: "Downloading EPA Daily Data"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{epa_download}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
 date: "2023-08-21"
 author: "Mariana Alifa"
 ---

diff --git a/R/epa_download.html → R/vignettes/epa_download.html b/R/epa_download.html → R/vignettes/epa_download.html
diff --git a/tools/.DS_Store b/tools/.DS_Store
diff --git a/R/shiny_explore_pm/data/.DS_Store → tools/shiny_explore_pm/data/.DS_Store b/R/shiny_explore_pm/data/.DS_Store → tools/shiny_explore_pm/data/.DS_Store
diff --git a/R/shiny_explore_pm/data/STFDF_pm25.rds → tools/shiny_explore_pm/data/STFDF_pm25.rds b/R/shiny_explore_pm/data/STFDF_pm25.rds → tools/shiny_explore_pm/data/STFDF_pm25.rds
diff --git a/R/shiny_explore_pm/data/STFDF_pm25_site.rds → ...shiny_explore_pm/data/STFDF_pm25_site.rds b/R/shiny_explore_pm/data/STFDF_pm25_site.rds → ...shiny_explore_pm/data/STFDF_pm25_site.rds
diff --git a/R/shiny_explore_pm/data/STVariogram_pm25.rds → ...hiny_explore_pm/data/STVariogram_pm25.rds b/R/shiny_explore_pm/data/STVariogram_pm25.rds → ...hiny_explore_pm/data/STVariogram_pm25.rds
diff --git a/...explore_pm/data/STVariogram_pm25_site.rds → ...explore_pm/data/STVariogram_pm25_site.rds b/...explore_pm/data/STVariogram_pm25_site.rds → ...explore_pm/data/STVariogram_pm25_site.rds
diff --git a/R/shiny_explore_pm/data/SharedData_sf.gpkg → .../shiny_explore_pm/data/SharedData_sf.gpkg b/R/shiny_explore_pm/data/SharedData_sf.gpkg → .../shiny_explore_pm/data/SharedData_sf.gpkg
diff --git a/...ny_explore_pm/data/SharedLongData.parquet → ...ny_explore_pm/data/SharedLongData.parquet b/...ny_explore_pm/data/SharedLongData.parquet → ...ny_explore_pm/data/SharedLongData.parquet
diff --git a/...iny_explore_pm/data/Site_missingrate.gpkg → ...iny_explore_pm/data/Site_missingrate.gpkg b/...iny_explore_pm/data/Site_missingrate.gpkg → ...iny_explore_pm/data/Site_missingrate.gpkg
diff --git a/...iny_explore_pm/data/States_NMonitors.gpkg → ...iny_explore_pm/data/States_NMonitors.gpkg b/...iny_explore_pm/data/States_NMonitors.gpkg → ...iny_explore_pm/data/States_NMonitors.gpkg
diff --git a/R/shiny_explore_pm/data/aqs_monitors.rds → tools/shiny_explore_pm/data/aqs_monitors.rds b/R/shiny_explore_pm/data/aqs_monitors.rds → tools/shiny_explore_pm/data/aqs_monitors.rds
diff --git a/R/shiny_explore_pm/data/aqs_sites.csv → tools/shiny_explore_pm/data/aqs_sites.csv b/R/shiny_explore_pm/data/aqs_sites.csv → tools/shiny_explore_pm/data/aqs_sites.csv
diff --git a/R/shiny_explore_pm/data/daily/no2.rds → tools/shiny_explore_pm/data/daily/no2.rds b/R/shiny_explore_pm/data/daily/no2.rds → tools/shiny_explore_pm/data/daily/no2.rds
diff --git a/R/shiny_explore_pm/data/daily/pm25_FRM.rds → .../shiny_explore_pm/data/daily/pm25_FRM.rds b/R/shiny_explore_pm/data/daily/pm25_FRM.rds → .../shiny_explore_pm/data/daily/pm25_FRM.rds
diff --git a/R/shiny_explore_pm/data/gadm41_USA_1.json → ...s/shiny_explore_pm/data/gadm41_USA_1.json b/R/shiny_explore_pm/data/gadm41_USA_1.json → ...s/shiny_explore_pm/data/gadm41_USA_1.json
diff --git a/R/shiny_explore_pm/data/monitors.rds → tools/shiny_explore_pm/data/monitors.rds b/R/shiny_explore_pm/data/monitors.rds → tools/shiny_explore_pm/data/monitors.rds
diff --git a/R/shiny_explore_pm/data/state_fips.csv → tools/shiny_explore_pm/data/state_fips.csv b/R/shiny_explore_pm/data/state_fips.csv → tools/shiny_explore_pm/data/state_fips.csv
diff --git a/...ssingness_exploration_pm_quarto_shiny.qmd → ...ssingness_exploration_pm_quarto_shiny.qmd b/...ssingness_exploration_pm_quarto_shiny.qmd → ...ssingness_exploration_pm_quarto_shiny.qmd