This Jupyter Docker container is used by the Galaxy Project and can be installed from the quay.io index.
You can use the same images we use in Galaxy on your local computer or any other platform:
- Pull an existing image locally
docker pull quay.io/nordicesmhub/docker-climate-notebook- Run a pre-build image from docker registry
To start your JupyterLab:
docker run -p 7777:8888 quay.io/nordicesmhub/docker-climate-notebook
and you will top open a new terminal and start your favorite web browser: your running Jupyter Notebook instance on http://localhost:7777/ipython/.
Remark: for reproducibility purpose, we suggest you use a specific tag e.g.
docker pull quay.io/nordicesmhub/docker-climate-notebook:2021-11-30Then use the same tag when starting yoru JupyterLab application:
docker run -p 7777:8888 quay.io/nordicesmhub/docker-climate-notebook:2021-11-30
- Build your own image and run it
Docker is a pre-requirement for this project. You can build the container with:
docker build -t climate-notebook . The build process can take some time, but if finished you can run your container with:
docker run -p 7777:8888 -i -t climate-notebookand you will have a running Jupyter Notebook instance on http://localhost:7777/ipython/.
Some environment variables are made available to the user which will allow for configuring the behaviour of individual instances.
| Variable | Use |
|---|---|
API_KEY |
Galaxy API Key with which to interface with Galaxy |
CORS_ORIGIN |
If the notebook is proxied, this is the URL the end-user will see when trying to access a notebook |
DEBUG |
Enable debugging mode, mostly for developers |
GALAXY_URL |
URL at which Galaxy is accessible |
GALAXY_WEB_PORT |
Port on which Galaxy is running, if applicable |
HISTORY_ID |
ID of current Galaxy History, used in easing the dataset upload/download process |
NOTEBOOK_PASSWORD |
Password with which to secure the notebook |
PROXY_PREFIX |
Prefix to URL which allows Galaxy proxy to share cookies with Galaxy itself. |
- Bjoern Gruening
- Eric Rasche
- Anne Fouilloux
-
v1.0: Initial public release with pangeo notebook sotware stack and a few more additional packages.
-
v1.1: Public release with the same set of packages than version v1.0 but it produces a slightly smaller docker container.
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The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
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