gblastn

1.2 [October 2019] version release is built on NCBI-BLAST 2.2.28.

Merge with ncbi-blast-2.2.28+.src support CUDA 10.1 Ubuntu 18.x GCC 7.x

gblastn

************************ G-BLASTN 1.1 [November 2013] ****************************

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
G-BLASTN can produce exactly the same results as NCBI-BLAST, and it also has very similar user
commands. It also supports a pipeline mode, which can fully utilize the GPU and CPU resources
when handling a batch of medium to large sized queries.

G-BLASTN is free software.

News:
1.1 version release support NCBI-BLAST 2.2.28.

I. Supported features

G-BLASTN accelerates the blastn module of NCBI-BLAST by GPUs. G-BLASTN has been tested on
NVIDIA GPUs GTX680, GTX780, and Quadro K5000.

Requirement:

1). Nvidia GPU card compute capability > 1.3
2). CUDA5.5 version. https://developer.nvidia.com/cuda-toolkit

gblastn

************************ G-BLASTN 1.0 [August 2013] ****************************

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
G-BLASTN can produce exactly the same results as NCBI-BLAST, and it also has very similar user
commands. It also supports a pipeline mode, which can fully utilize the GPU and CPU resources
when handling a batch of medium to large sized queries.

G-BLASTN is free software.

I. Supported features

G-BLASTN accelerates the blastn module of NCBI-BLAST by GPUs. G-BLASTN has been tested on
NVIDIA GPUs GTX680, GTX780, and Quadro K5000.

II. Installation instructions

G-BLASTN directly modifies NCBI-BLAST 2.2.26 by adding GPU functionality. To install G-BLASTN,
you can:

1. Download gblastn.

2. 64bit Linux System.