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Converting NeuroML2/LEMS to & from SBML

Continuous build using OMV Testing non OMV scripts

Most of the interactions between SBML and LEMS/NeuroML showcased here are enabled by:

Note these features can be accessed easily with the pyNeuroML tool. For example:

  • Load LEMSFile.xml using pyNeuroML, and convert it to SBML format:

     pynml LEMSFile.xml -sbml
    
  • Load LEMSFile.xml using pyNeuroML, and convert it to SBML format with a SED-ML specification for the experiment:

     pynml LEMSFile.xml -sbml-sedml
    
  • Load SBMLFile.sbml using jSBML, and convert it to LEMS format using values for duration & dt in ms

    pynml -sbml-import SBMLFile.sbml duration dt
    

See also https://github.com/ModECI/modelspec/blob/main/examples/COMBINE.md.

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