upgrade renv version in deployment yaml

.github/workflows/shinyapps_deploy.yml

@@ -13,9 +13,9 @@ on:
       - v[0-9]+.[0-9]+.[0-9]+
 
     paths-ignore:
-      - '.github/ISSUE_TEMPLATE/**'
-      - '**/*.md'
-      - '**/.gitignore'
+      - ".github/ISSUE_TEMPLATE/**"
+      - "**/*.md"
+      - "**/.gitignore"
 
 jobs:
   shiny-deploy:
@@ -26,42 +26,41 @@ jobs:
       SCHEMATIC_URL_STAGING: https://schematic-staging.api.sagebionetworks.org
       SCHEMATIC_URL_PROD: https://schematic.api.sagebionetworks.org
       # This should not be necessary for installing from public repo's however remotes::install_github() fails without it.
-      GITHUB_PAT:  ${{ secrets.GITHUB_TOKEN }}
-
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - name: Install System Dependencies
         run: |
           sudo apt-get update
           sudo apt-get install -y pip libcurl4-openssl-dev libpng-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libtiff-dev libxml2-dev
-        
+
       # this action checks out the $GITHUB_WORKSPACE repository so that the workflow can access it
       - uses: actions/checkout@v3
-        
+
       # this action sets up pandoc
       - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
-          r-version: 'renv' 
+          r-version: "renv"
 
       # install packages
-      - name: Install rsconnect
+      - name: Install renv and rsconnect
         run: |
           install.packages("renv")
-          renv::upgrade(version = "0.17.3")
+          renv::upgrade(version = "1.0.2")
           renv::install("rsconnect@0.8.29")
         shell: Rscript {0}
-        
+
       # this action activates renv
       - uses: r-lib/actions/setup-renv@v2
 
         # deploy app using rsconnect
       - name: Authorize and deploy app
         run: |
           renv::restore(packages = "renv")
-          
+
           refName <- Sys.getenv("GITHUB_REF_NAME")
           repo <- Sys.getenv("GITHUB_REPOSITORY")
           appName <- strsplit(repo, "/")[[1]][2]
@@ -92,13 +91,13 @@ jobs:
           rsConnectUser <-"${{ secrets.RSCONNECT_USER }}"
           rsConnectToken <- "${{ secrets.RSCONNECT_TOKEN }}"
           rsConnectSecret <- "${{ secrets.RSCONNECT_SECRET }}"
- 
+
           # create config file
           config <- "client_id: ${{ secrets.OAUTH_CLIENT_ID }}"
           config <- c(config, "client_secret: ${{ secrets.OAUTH_CLIENT_SECRET }}")
           appUrl<- sprintf("https://%s.shinyapps.io/%s", rsConnectUser, appName)
           config <- c(config, sprintf("app_url: %s", appUrl))
-         
+
           # write config file
           configFileConn<-file("oauth_config.yml")
           tryCatch(
@@ -108,11 +107,11 @@ jobs:
 
           # set account info
           rsconnect::setAccountInfo(rsConnectUser, rsConnectToken, rsConnectSecret)
-          
+
           # get app names. If app exists, configure then deploy. Otherwise
           # deploy then configure.
           apps <- rsconnect::applications()$name
-          
+
           if (appName %in% apps) {
             rsconnect::configureApp(appName = appName, size = "xxxlarge", logLevel = "verbose")
             rsconnect::deployApp(appName = appName)