Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

match/mismatch accuracy on simulations #2

Open
wants to merge 11 commits into
base: main
Choose a base branch
from
Open

match/mismatch accuracy on simulations #2

wants to merge 11 commits into from

Conversation

emdann
Copy link
Member

@emdann emdann commented Nov 28, 2022

Added notebook with:

  • functions to split dataset in reference and query simulating mismatch (deletions/insertions) in the query, of different lengths and starts
  • Code to compute "match prediction accuracy" (i.e. in which fraction of bins does the alignment correctly identify a match or a mismatch?)
  • Test on pancreas dataset using 5 genes picked from the CellRank paper.

@emdann
Copy link
Member Author

emdann commented Dec 12, 2022

Insertion/deletion accuracy results are saved in:

/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.insertion.csv
/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.deletion.csv

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants