🔀 Merge develop into dev-define-engine-abc
#928
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| # This workflow will install the package as is on the github default branch using pip | |
| name: pip Install | |
| on: | |
| push: | |
| paths: [ "requirements*.yml", "conda-env-create.yml", "requirements/requirement*.txt", "setup*py", "setup*cfg", "pytproject*toml", "MANIFEST*in"] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| os: [ubuntu-24.04, windows-latest, macos-latest] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 🐧 Install OpenSlide & OpenJPEG | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt update | |
| sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools | |
| python -m pip install --upgrade pip | |
| - name: 🍎 Install OpenSlide & OpenJPEG | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install openslide openjpeg | |
| python -m pip install --upgrade pip | |
| - name: 🪟 Install OpenJPEG | |
| if: runner.os == 'Windows' | |
| run: | | |
| # Install OpenJPEG | |
| git clone https://github.com/uclouvain/openjpeg.git | |
| cd openjpeg | |
| mkdir build | |
| cd build | |
| cmake -G "MinGW Makefiles" .. -DCMAKE_BUILD_TYPE=Release | |
| ls | |
| make -j4 | |
| make install | |
| make clean | |
| - name: 🪟 Install OpenSlide | |
| if: runner.os == 'Windows' | |
| run: | | |
| choco install wget --no-progress | |
| wget https://github.com/openslide/openslide-winbuild/releases/download/v20220811/openslide-win64-20220811.zip | |
| 7z x openslide-win64-20220811.zip | |
| ls openslide-win64-20220811 | |
| # Add to PATH | |
| echo "$(realpath ./openslide-win64-20220811/bin)" >> $GITHUB_PATH | |
| echo "$(realpath ./openslide-win64-20220811/lib)" >> $GITHUB_PATH | |
| # Install | |
| mkdir "C:\Program Files\openslide" | |
| Copy-Item -Path ".\openslide-win64-20220811\*" -Destination "C:\Program Files\openslide" -Recurse | |
| ls "C:/Program Files/openslide" | |
| - name: 🪟 Install SQLite Shell | |
| if: runner.os == 'Windows' | |
| run: choco install sqlite.shell --no-progress | |
| - name: SQLite Version Information | |
| run: | | |
| sqlite3 --version | |
| sqlite3 ":memory:" -list ".output stdout" "pragma compile_options" ".exit" | |
| - name: OpenSlide Version Information | |
| if: runner.os == 'Linux' | |
| run: openslide-quickhash1sum --version | |
| - name: OpenJPEG Version Information | |
| continue-on-error: true # This -h option has exit code 1 for some reason | |
| run: opj_dump -h | |
| - name: pip Install From GitHub Repo on Linux and macOS | |
| if: runner.os != 'Windows' | |
| run: python -m pip install git+https://github.com/TissueImageAnalytics/tiatoolbox@${GITHUB_REF_NAME} | |
| - name: pip Install From GitHub on Windows | |
| if: runner.os == 'Windows' | |
| run: python -m pip install git+https://github.com/TissueImageAnalytics/tiatoolbox@$env:GITHUB_REF_NAME | |
| - name: Test TIAToolbox Import | |
| shell: python | |
| run: | | |
| import os | |
| if hasattr(os, "add_dll_directory"): | |
| # Required for Python>=3.8 on Windows | |
| with os.add_dll_directory(r"D:\a\tiatoolbox\tiatoolbox\openslide-win64-20220811\bin"): | |
| import tiatoolbox | |
| else: | |
| os.environ["PATH"] = r"D:\a\tiatoolbox\tiatoolbox\openslide-win64-20220811\bin;" | |
| import tiatoolbox |