Changed working directory slurm

Vitek-Lab · Nov 12, 2024 · 0fb0f9c · 0fb0f9c
1 parent 54c52cd
commit 0fb0f9c
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 5 deletions.
diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml
@@ -6,7 +6,7 @@ on:
       - feature/ci-cd-pipeline
 
 jobs:
-  test-hpc:
+  Benchmarking-pipeline:
     runs-on: ubuntu-latest
 
     steps:
@@ -45,8 +45,8 @@ jobs:
 
     - name: Fetch Output
       run: |
-        scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output/job_output.txt job_output.txt
-        scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output/job_error.txt job_error.txt
+        scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_output.txt job_output.txt
+        scp raina.ans@login-00.discovery.neu.edu:/work/VitekLab/Projects/Benchmarking/job_error.txt job_error.txt
 
     - name: Upload Output as Artifact
       uses: actions/upload-artifact@v4

diff --git a/benchmark/config.slurm b/benchmark/config.slurm
@@ -1,7 +1,8 @@
 #!/bin/bash
 #SBATCH --job-name=msstats_benchmark_job
-#SBATCH --output=/work/VitekLab/Projects/Benchmarking/job_output/job_output.txt
-#SBATCH --error=/work/VitekLab/Projects/Benchmarking/job_output/job_error.txt
+#SBATCH --chdir=/work/VitekLab/Projects/Benchmarking/
+#SBATCH --output=job_output.txt
+#SBATCH --error=job_error.txt
 #SBATCH --time=01:00:00         # Set the maximum run time
 #SBATCH --ntasks=1              # Number of tasks (one process)
 #SBATCH --cpus-per-task=8      # Use 8 CPU cores for the task