SGD: Spatial Grouping Discrepancy

SGD is a evaluation metric for Spatial Transcriptomics data. It addresses the limitations of existing clustering evaluation metrics by accounting for label agreement, spatial locations, and error severity simultaneously.

Installation

1. Install the package from GitHub

if (!requireNamespace("devtools", quietly = TRUE)) {
  install.packages("devtools")
}
devtools::install_github("YihDu/SGD")

2. Load the package

library(SGD)

How to use SGD

Please refer to the documentation for details.